Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_T7_E13
(776 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 31 0.24
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p... 27 2.3
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 26 6.9
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 30.7 bits (66), Expect = 0.24
Identities = 25/87 (28%), Positives = 31/87 (35%), Gaps = 4/87 (4%)
Frame = +2
Query: 437 PAXSXPPLAXXPTLGXXVXGPXXXXXPXXRXPXGXXPPXPXXXSXPXPXXXAS-PGXPXP 613
P+ PP+ P G P P + G P P + P P A P P P
Sbjct: 1174 PSSGIPPVPK-PAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVP 1232
Query: 614 XAXXLP-PRPXS--PXRSXPXAXLXXP 685
A P P P S P S P + + P
Sbjct: 1233 TAKAPPVPAPSSEAPSVSTPRSSVPSP 1259
Score = 29.9 bits (64), Expect = 0.43
Identities = 24/103 (23%), Positives = 30/103 (29%), Gaps = 2/103 (1%)
Frame = +3
Query: 369 AXPXXPXPTLALXXXLSXXXSXPXPXPXPRXPPXPXSXXLFXAXXPXXI--PIXXPPXXX 542
A P P P++A+ + + P P P PP P P P+ P
Sbjct: 1100 AAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAP 1159
Query: 543 XXPGPSXXXXPXXXXXXXXXXXXXSQXXXPRVXPXPXXVXPXP 671
P PS P P V P P P P
Sbjct: 1160 PVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPV-PPPSEAPPVP 1201
Score = 28.7 bits (61), Expect = 0.98
Identities = 35/132 (26%), Positives = 41/132 (31%), Gaps = 9/132 (6%)
Frame = +1
Query: 400 PSXXXSXLXXPS-PXPLPAPAXXPPHXRXXCSGPXXXPXSXSPXPPWXXPXXA------X 558
PS + PS P+PAP+ PP + + P P PP P A
Sbjct: 1069 PSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAP-PVPKPSVAVPPVPAPSGAPPVPKPS 1127
Query: 559 LXLXPXPXXXGIPRXXXP-XRXPXXPASXLXPAXSXPCPXXRPRLWRXSXXXRXP-PXXP 732
+ P P G P P P PA P P P S P P
Sbjct: 1128 VAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAG 1187
Query: 733 XXWXPPPSLXXP 768
PPPS P
Sbjct: 1188 VPPVPPPSEAPP 1199
Score = 28.7 bits (61), Expect = 0.98
Identities = 19/76 (25%), Positives = 26/76 (34%)
Frame = +2
Query: 437 PAXSXPPLAXXPTLGXXVXGPXXXXXPXXRXPXGXXPPXPXXXSXPXPXXXASPGXPXPX 616
P+ + PP+ + V P P P P P P +P P P
Sbjct: 1164 PSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPS 1223
Query: 617 AXXLPPRPXSPXRSXP 664
A LPP P ++ P
Sbjct: 1224 A-GLPPVPVPTAKAPP 1238
Score = 28.3 bits (60), Expect = 1.3
Identities = 21/77 (27%), Positives = 28/77 (36%), Gaps = 1/77 (1%)
Frame = +2
Query: 437 PAXSXPPLAXXPTLGXXVXGPXXXXXPXXRXPXGXXP-PXPXXXSXPXPXXXASPGXPXP 613
PA S P P++ P P G P P P + P P +P P P
Sbjct: 1086 PAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKP 1145
Query: 614 XAXXLPPRPXSPXRSXP 664
+ PP P +P + P
Sbjct: 1146 -SVAAPPVP-APSGAPP 1160
Score = 26.6 bits (56), Expect = 4.0
Identities = 36/127 (28%), Positives = 45/127 (35%), Gaps = 4/127 (3%)
Frame = +1
Query: 400 PSXXXSXLXXPS-PXPLPAPAXXPPHXRXXCSGPXXXPXSXSPXPPWXXPXXAXLXLXPX 576
P S PS P P+PAP+ P SG P + S PP P A + P
Sbjct: 1050 PPVPKSSSGAPSAPPPVPAPSSEIPSIPAP-SGAPPVP-APSGIPPVPKPSVAAPPV-PK 1106
Query: 577 PXXXGIPRXXXPXRXPXXPASXLXPAXSXPCPXXRPRLWRXSXXXRXPPXXPXXWXPP-- 750
P +P P P P + A P P P + + S PP PP
Sbjct: 1107 P-SVAVPPVPAPSGAPPVPKPSV-AAPPVPVPSGAPPVPKPS--VAAPPVPAPSGAPPVP 1162
Query: 751 -PSLXXP 768
PS+ P
Sbjct: 1163 KPSVAAP 1169
Score = 26.2 bits (55), Expect = 5.2
Identities = 22/94 (23%), Positives = 28/94 (29%), Gaps = 2/94 (2%)
Frame = +2
Query: 389 PHXXPQXGXLXSXXXPPAXSXPPLAXXPT-LGXXVXGPXXXXXPXXRXPXGXXP-PXPXX 562
P P L S P PP A + P P + P P P
Sbjct: 970 PPPLPVSNILSSPTSEPPKDHPPSAPLSKPVSTSPAAPLARVPPVPKLSSKAPPVPLPSA 1029
Query: 563 XSXPXPXXXASPGXPXPXAXXLPPRPXSPXRSXP 664
+ P P +P P P + P+ S S P
Sbjct: 1030 DAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAP 1063
Score = 26.2 bits (55), Expect = 5.2
Identities = 16/64 (25%), Positives = 22/64 (34%)
Frame = +1
Query: 442 PLPAPAXXPPHXRXXCSGPXXXPXSXSPXPPWXXPXXAXLXLXPXPXXXGIPRXXXPXRX 621
P+P P+ PP + P S +P P P + + P G P P
Sbjct: 1033 PIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSS-EIPSIPAPSGAPPVPAPSGI 1091
Query: 622 PXXP 633
P P
Sbjct: 1092 PPVP 1095
Score = 25.8 bits (54), Expect = 6.9
Identities = 21/77 (27%), Positives = 24/77 (31%), Gaps = 1/77 (1%)
Frame = +2
Query: 437 PAXSXPPLAXXPTLGXXVXGPXXXXXPXXRXPXGXXPPXPXXXSXPXPXXXASPG-XPXP 613
PA S P P++ P P PP P P P S G P P
Sbjct: 1153 PAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAP-PVPKPSVGVPPVP 1211
Query: 614 XAXXLPPRPXSPXRSXP 664
PP P +P P
Sbjct: 1212 PPSTAPPVP-TPSAGLP 1227
>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 517
Score = 27.5 bits (58), Expect = 2.3
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -2
Query: 319 VRSLMSNLSNTCDLTPLPEWSCEQSAW 239
VRS+ L D+TP+ +W ++S W
Sbjct: 109 VRSIEQELEQLRDVTPINQWKRKRSLW 135
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 25.8 bits (54), Expect = 6.9
Identities = 16/62 (25%), Positives = 19/62 (30%), Gaps = 4/62 (6%)
Frame = +2
Query: 434 PPAXSXPPLAXXPTLGXXVXGPXXXXXPXXRXPXGXXPPXPXXXSXP----XPXXXASPG 601
PP PP+ P + P P G P P + P P A PG
Sbjct: 500 PPGVPLPPIPGAPGMPNLNMSQPPMVPPGMALPPGMPAPFPGYPAVPAMPGIPGATAPPG 559
Query: 602 XP 607
P
Sbjct: 560 AP 561
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,382,817
Number of Sequences: 5004
Number of extensions: 16201
Number of successful extensions: 86
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 64
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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