Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_T7_E08
(728 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 33 0.055
SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|ch... 30 0.29
SPCC1753.02c |git3||G-protein coupled receptor Git3|Schizosaccha... 27 2.1
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|... 27 2.1
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 26 4.8
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 4.8
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 26 4.8
SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase Rdp1|Schizosa... 26 6.3
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc... 25 8.4
SPBC23G7.08c |rga7||GTPase activating protein Rga7|Schizosacchar... 25 8.4
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 25 8.4
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 32.7 bits (71), Expect = 0.055
Identities = 22/74 (29%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
Frame = -2
Query: 589 QPAGKSLXRTRGATRERLS*RRSGVKTAGSG-RPRTADSSSATRPSMMTTTNRSPAATLT 413
Q S+ T E ++ + TA G RP T+ S++ T P+ TN+ T
Sbjct: 200 QSVNSSVTSNPPHTEEPVAAKPEASSTATKGPRPTTSASNTNTSPANGAPTNKPSTDINT 259
Query: 412 RTPMTQTTKPKAAS 371
P TQTT+ A++
Sbjct: 260 TDPATQTTQVSASN 273
>SPAC27D7.11c |||But2 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 463
Score = 30.3 bits (65), Expect = 0.29
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = -2
Query: 484 ADSSSATRPSMMTTTNRSPAATLTRTPMTQTTKPKAASLRSF 359
A + ++T+PS +T+T R AT T+T P A+S+ ++
Sbjct: 240 ASTVTSTQPSTVTSTQRKNTATTTKTTTYVGPSPSASSVVAY 281
>SPCC1753.02c |git3||G-protein coupled receptor
Git3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 27.5 bits (58), Expect = 2.1
Identities = 15/28 (53%), Positives = 17/28 (60%)
Frame = +2
Query: 146 PSS*YRPWLSSVCNHLPA*TLQTPQNLN 229
PS RP LSSV +LP + TP NLN
Sbjct: 275 PSPYSRPLLSSVHPNLPPGSQSTPANLN 302
>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 27.5 bits (58), Expect = 2.1
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -1
Query: 590 SASRKITXTNPRSDQRTTELKTQRSKDGGFRTA 492
S KIT T+P T LKT+ SK G + A
Sbjct: 158 SKDEKITNTDPIPSPIITNLKTESSKSSGAKKA 190
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 26.2 bits (55), Expect = 4.8
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 4/42 (9%)
Frame = -2
Query: 484 ADSSSATRPSMMTTTNRSPAA----TLTRTPMTQTTKPKAAS 371
+DSSS+T ++TT+ SPA TLT +T T +S
Sbjct: 191 SDSSSSTNTVILTTSVNSPAVSSSETLTSVSITSTESAYTSS 232
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 26.2 bits (55), Expect = 4.8
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Frame = -2
Query: 508 AGSGRPRTADS--SSATRPSMMTTTNRSPAATLTRTPMTQTTKPKAAS 371
AGSG T S S+ T+P+ + T + + T TTKP A+
Sbjct: 558 AGSGSATTIPSPGSATTKPTPGSATTKPTPVSATEEHAAGTTKPAPAA 605
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 26.2 bits (55), Expect = 4.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 478 SSSATRPSMMTTTNRSPAATLTRTPMT 398
SS+ +RP + T+ RS A T P+T
Sbjct: 1084 SSAVSRPPIATSAGRSSTAASTSAPLT 1110
>SPAC6F12.09 |rdp1|rdr1|RNA-directed RNA polymerase
Rdp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1215
Score = 25.8 bits (54), Expect = 6.3
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = -1
Query: 125 YLPLSRTNLNKRKKSVNSKQ 66
+L L+R+ L+K +S+NSKQ
Sbjct: 715 FLELTRSQLSKMNESINSKQ 734
>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
Sap155|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1188
Score = 25.4 bits (53), Expect = 8.4
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 212 TPQNLNSCVSPSLRSCTWSRRL 277
TP+ L + V P C WSRR+
Sbjct: 686 TPEYLRTDVLPEFFHCFWSRRM 707
>SPBC23G7.08c |rga7||GTPase activating protein
Rga7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.4 bits (53), Expect = 8.4
Identities = 12/45 (26%), Positives = 20/45 (44%)
Frame = -2
Query: 523 SGVKTAGSGRPRTADSSSATRPSMMTTTNRSPAATLTRTPMTQTT 389
+G ++ S PRT+ ++ + +SP L P QTT
Sbjct: 418 NGSSSSSSSNPRTSSPLASNAENKPPVAQQSPPVLLPTLPPIQTT 462
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.4 bits (53), Expect = 8.4
Identities = 12/42 (28%), Positives = 25/42 (59%)
Frame = -2
Query: 487 TADSSSATRPSMMTTTNRSPAATLTRTPMTQTTKPKAASLRS 362
T+ SSS++ S TTT SP+++ + + + ++ ++S S
Sbjct: 136 TSSSSSSSPSSSSTTTTTSPSSSSSSSSSSSSSSSSSSSSSS 177
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,063,181
Number of Sequences: 5004
Number of extensions: 32659
Number of successful extensions: 120
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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