Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_E07
         (751 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0225 - 15855544-15855727,15855796-15856406                       30   1.7  
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902     29   3.0  
12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423     28   6.9  
06_03_1330 - 29375494-29376912                                         28   9.1  

>09_04_0225 - 15855544-15855727,15855796-15856406
          Length = 264

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
 Frame = -3

Query: 260 GXPXGFNGXEDTAPACCTRCSSC-FWSTPC--SRRMVCPGTR 144
           G P   +      P+  TRC SC  W+T C  + R  CP TR
Sbjct: 161 GKPRRTSTSAGATPSATTRCRSCTAWATSCPGTSRAGCPPTR 202


>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
          Length = 781

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -3

Query: 209 TRCSSCFWSTPCSRRMVCPGTR*VEHN 129
           T C  C    P   + VCPG+R V+ N
Sbjct: 275 TECKKCLAGAPAGIKQVCPGSRTVKAN 301



 Score = 27.9 bits (59), Expect = 9.1
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = -3

Query: 209 TRCSSCFWSTPCSRRMVCPGTR 144
           TRC  C    P   R  CPG+R
Sbjct: 81  TRCKECLARAPAGVRQECPGSR 102


>12_02_1050 + 25689933-25690954,25691021-25691215,25691357-25691423
          Length = 427

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -3

Query: 209 TRCSSCFWSTPCSRRMVCPGTR*VEHN 129
           T+C  C    P     VCPG+R V  N
Sbjct: 93  TQCKECLAGAPAGITQVCPGSRTVNAN 119


>06_03_1330 - 29375494-29376912
          Length = 472

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 230 DTAPACCTRCSSCFWSTPCSRRMV 159
           + AP CC    +C  S PCS+ +V
Sbjct: 302 EIAPPCCCSGRACSMSIPCSKYLV 325


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,080,220
Number of Sequences: 37544
Number of extensions: 124967
Number of successful extensions: 194
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1992480932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)