Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_E04
         (766 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit L9|S...    27   2.9  
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    27   3.9  
SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|c...    27   3.9  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   5.1  
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    26   5.1  

>SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit
           L9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 259

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/15 (66%), Positives = 13/15 (86%)
 Frame = +1

Query: 343 KTFYHHANLLPQQIL 387
           +TF HHANL P++IL
Sbjct: 13  RTFAHHANLTPRKIL 27


>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1024

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 357 PRKPLTATNLTSHHANYNFTGSTSPTRCYSPP 452
           P KP +AT+++S        GST+ T  + PP
Sbjct: 529 PTKPFSATDISSVQPTNLPNGSTNGTETFIPP 560


>SPBC2G2.10c |mug110||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 248

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 318 PSATCADSQDILPPRKPLTATNLTSHHANYNFTGST 425
           PSA+ + S  + PP + L+  ++TS HA  N    T
Sbjct: 213 PSASASISDSLPPPYQVLSVPSVTSTHAFSNNANQT 248


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 25/79 (31%), Positives = 35/79 (44%)
 Frame = +3

Query: 303 TAEVSPSATCADSQDILPPRKPLTATNLTSHHANYNFTGSTSPTRCYSPPEEXTGNPVXP 482
           T  V P++T + S  I PP    T+T+ T  +++   T STS T   S P   TGN   P
Sbjct: 248 TPTVPPTSTSSTSIPI-PP----TSTSSTDTNSSPLPTTSTSCTTSTSIPP--TGNSTTP 300

Query: 483 XQXPLXRKNPXXXGNPKPP 539
               +   +      P PP
Sbjct: 301 VTPTVPPTSTSSTSTPPPP 319


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 378 TNLTSHHANYNFTGSTSPTRCYSPPEEXTGN 470
           TN   +H  Y F+  TSPT   + PEE   N
Sbjct: 626 TNPLPYHIVYMFSFETSPTVFQTSPEEDKEN 656


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,299,032
Number of Sequences: 5004
Number of extensions: 40262
Number of successful extensions: 117
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)