Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_E04
         (766 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    31   0.68 
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    31   0.68 
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    31   0.68 
U51997-1|AAG24067.1|  572|Caenorhabditis elegans Activated in bl...    29   2.7  
Z81085-2|CAB03114.2|  618|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z70684-3|CAA94598.1|  233|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z83222-1|CAB05712.1|  410|Caenorhabditis elegans Hypothetical pr...    29   4.8  
U22831-12|AAL65784.1|  614|Caenorhabditis elegans G-protein-link...    29   4.8  
U22831-11|AAL65783.1|  627|Caenorhabditis elegans G-protein-link...    29   4.8  
U22831-10|AAM98012.1|  667|Caenorhabditis elegans G-protein-link...    29   4.8  
AY053365-1|AAL15153.1|  627|Caenorhabditis elegans G-protein-lin...    29   4.8  
AY053364-1|AAL15152.1|  664|Caenorhabditis elegans G-protein-lin...    29   4.8  
AF272738-1|AAK94896.1|  614|Caenorhabditis elegans G protein-lin...    29   4.8  
Z93393-1|CAB07688.1|  497|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z50795-1|CAA90662.1|  502|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z96047-4|CAB09414.1|  796|Caenorhabditis elegans Hypothetical pr...    28   8.4  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    28   8.4  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    28   8.4  

>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 26/84 (30%), Positives = 31/84 (36%)
 Frame = +3

Query: 417 GSTSPTRCYSPPEEXTGNPVXPXQXPLXRKNPXXXGNPKPPXXQKKXPGXXLFRVXKTPX 596
           GS  P R  SPP   TG+P  P         P   G+P PP   +  P         T  
Sbjct: 262 GSPPPPRTGSPPPPPTGSPPPPPAG--GSPPPPRAGSPPPPPPPRGSP--------PTGS 311

Query: 597 LXXFXPPXKXXXFXPPPXXGAPXP 668
           L    PP +     PP   G+P P
Sbjct: 312 L----PPPQAGGSPPPAGTGSPPP 331


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 26/84 (30%), Positives = 31/84 (36%)
 Frame = +3

Query: 417 GSTSPTRCYSPPEEXTGNPVXPXQXPLXRKNPXXXGNPKPPXXQKKXPGXXLFRVXKTPX 596
           GS  P R  SPP   TG+P  P         P   G+P PP   +  P         T  
Sbjct: 283 GSPPPPRTGSPPPPPTGSPPPPPAG--GSPPPPRAGSPPPPPPPRGSP--------PTGS 332

Query: 597 LXXFXPPXKXXXFXPPPXXGAPXP 668
           L    PP +     PP   G+P P
Sbjct: 333 L----PPPQAGGSPPPAGTGSPPP 352


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 31.5 bits (68), Expect = 0.68
 Identities = 26/84 (30%), Positives = 31/84 (36%)
 Frame = +3

Query: 417 GSTSPTRCYSPPEEXTGNPVXPXQXPLXRKNPXXXGNPKPPXXQKKXPGXXLFRVXKTPX 596
           GS  P R  SPP   TG+P  P         P   G+P PP   +  P         T  
Sbjct: 268 GSPPPPRTGSPPPPPTGSPPPPPAG--GSPPPPRAGSPPPPPPPRGSP--------PTGS 317

Query: 597 LXXFXPPXKXXXFXPPPXXGAPXP 668
           L    PP +     PP   G+P P
Sbjct: 318 L----PPPQAGGSPPPAGTGSPPP 337


>U51997-1|AAG24067.1|  572|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 2 protein.
          Length = 572

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 11/40 (27%), Positives = 17/40 (42%)
 Frame = -1

Query: 199 PILEPPRSGCTCARVRRLVGDCAVAGPTRDVNVCVPELQC 80
           P  +P  + C+C     +   C+ A P +     VP  QC
Sbjct: 45  PYTQPQETSCSCQNTAPVQTSCSCAQPVQQQTYLVPTSQC 84


>Z81085-2|CAB03114.2|  618|Caenorhabditis elegans Hypothetical
           protein F46F3.2 protein.
          Length = 618

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 19/62 (30%), Positives = 29/62 (46%)
 Frame = +2

Query: 224 RRLADPSAGLRTVEAIRPAPADWVGRDRGSLTFGYLCRLTRHFTTTQTSYRNKSYQPPRX 403
           + L DPS     + AIR A   W+  +  +  +     L ++FTT +  +RN     PR 
Sbjct: 58  KSLHDPSTADIDLLAIRRAEV-WIRNEHDAEKYDVPVELLQNFTTIRIVFRNVCRLLPRV 116

Query: 404 LQ 409
           LQ
Sbjct: 117 LQ 118


>Z70684-3|CAA94598.1|  233|Caenorhabditis elegans Hypothetical
           protein F28D1.3 protein.
          Length = 233

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 30/117 (25%), Positives = 40/117 (34%)
 Frame = -1

Query: 487 WXGXTGXPVXSSGGE*HRVGEVEPVKL*XAWWLVRFVAVRGLRGGKMSCESAQVAEGETS 308
           W G  G    S GG     G+   + +  AW   R  A  G   G  +CE+      E  
Sbjct: 33  WPGILGPGNPSGGGFKLNAGQSRDINVDDAWTAGRVWARTGC-DGNFNCETGFCRNSEQC 91

Query: 307 AVAAHPVRGSRADRLDGAEAGRRVRQTTRSRLQHGLPILEPPRSGCTCARVRRLVGD 137
             A      S A+    A  G+     +     + LP+L  P  G  C R    V D
Sbjct: 92  NGAGGVPPASLAEFTLKAWGGQDFYDVSLVD-GYNLPVLIDPHGGSGCKRAGGCVKD 147


>Z83222-1|CAB05712.1|  410|Caenorhabditis elegans Hypothetical
           protein E01B7.1 protein.
          Length = 410

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 14/45 (31%), Positives = 18/45 (40%)
 Frame = +1

Query: 376 QQILPATTXTTILRVPPLLHDVTPPLRXQPXTLXXPPXPPFXGKT 510
           Q  +P    T    +PP L   TPP   +P     PP  P   +T
Sbjct: 353 QSTIPPVAMTQRPMIPPSLPSSTPPAPLKPVAPPTPPIFPLLDRT 397


>U22831-12|AAL65784.1|  614|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor protein 2, isoform b protein.
          Length = 614

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +3

Query: 318 PSATCADSQDILPPRKPLTATNLTSHHANYNFTGSTSPTRCYSPPEEXT-GNP 473
           P+ T   +Q  +    P+   ++T H+ N +FT      R  +PP++ T  NP
Sbjct: 252 PTTTVQTTQTNVGTPPPVFRNHMTLHNNNMDFTKDNEIVRPPTPPDDNTYSNP 304


>U22831-11|AAL65783.1|  627|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor protein 2, isoform a protein.
          Length = 627

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +3

Query: 318 PSATCADSQDILPPRKPLTATNLTSHHANYNFTGSTSPTRCYSPPEEXT-GNP 473
           P+ T   +Q  +    P+   ++T H+ N +FT      R  +PP++ T  NP
Sbjct: 252 PTTTVQTTQTNVGTPPPVFRNHMTLHNNNMDFTKDNEIVRPPTPPDDNTYSNP 304


>U22831-10|AAM98012.1|  667|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor protein 2, isoform c protein.
          Length = 667

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +3

Query: 318 PSATCADSQDILPPRKPLTATNLTSHHANYNFTGSTSPTRCYSPPEEXT-GNP 473
           P+ T   +Q  +    P+   ++T H+ N +FT      R  +PP++ T  NP
Sbjct: 252 PTTTVQTTQTNVGTPPPVFRNHMTLHNNNMDFTKDNEIVRPPTPPDDNTYSNP 304


>AY053365-1|AAL15153.1|  627|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor GAR-2b protein.
          Length = 627

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +3

Query: 318 PSATCADSQDILPPRKPLTATNLTSHHANYNFTGSTSPTRCYSPPEEXT-GNP 473
           P+ T   +Q  +    P+   ++T H+ N +FT      R  +PP++ T  NP
Sbjct: 252 PTTTVQTTQTNVGTPPPVFRNHMTLHNNNMDFTKDNEIVRPPTPPDDNTYSNP 304


>AY053364-1|AAL15152.1|  664|Caenorhabditis elegans G-protein-linked
           acetylcholinereceptor GAR-2a protein.
          Length = 664

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +3

Query: 318 PSATCADSQDILPPRKPLTATNLTSHHANYNFTGSTSPTRCYSPPEEXT-GNP 473
           P+ T   +Q  +    P+   ++T H+ N +FT      R  +PP++ T  NP
Sbjct: 252 PTTTVQTTQTNVGTPPPVFRNHMTLHNNNMDFTKDNEIVRPPTPPDDNTYSNP 304


>AF272738-1|AAK94896.1|  614|Caenorhabditis elegans G protein-linked
           acetylcholinereceptor GAR-2c protein.
          Length = 614

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +3

Query: 318 PSATCADSQDILPPRKPLTATNLTSHHANYNFTGSTSPTRCYSPPEEXT-GNP 473
           P+ T   +Q  +    P+   ++T H+ N +FT      R  +PP++ T  NP
Sbjct: 252 PTTTVQTTQTNVGTPPPVFRNHMTLHNNNMDFTKDNEIVRPPTPPDDNTYSNP 304


>Z93393-1|CAB07688.1|  497|Caenorhabditis elegans Hypothetical
           protein Y48E1B.1 protein.
          Length = 497

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/36 (33%), Positives = 15/36 (41%)
 Frame = +1

Query: 388 PATTXTTILRVPPLLHDVTPPLRXQPXTLXXPPXPP 495
           PA T   I  +PP++    PP    P     PP  P
Sbjct: 338 PAATPVEITEIPPIISPPAPPPPPPPPPPPPPPQTP 373


>Z50795-1|CAA90662.1|  502|Caenorhabditis elegans Hypothetical
           protein R166.1 protein.
          Length = 502

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = +3

Query: 306 AEVSPSATCADSQDILPPRKPLTATNLTSHHANYNFTGSTSPTRCYSPPEEXT 464
           A + P+ T   S  + PP    TA   + +    NF+G+ S TR    P   T
Sbjct: 205 AGILPATTTNVSAAVPPPSSRATANVFSGNSIGLNFSGAASVTRHLVVPPSST 257


>Z96047-4|CAB09414.1|  796|Caenorhabditis elegans Hypothetical
           protein DY3.5 protein.
          Length = 796

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +2

Query: 491 PPXPEKPXSPXEPXTPXXPKKXPRXXP 571
           PP P +P S   P +   PK  PR  P
Sbjct: 620 PPPPTRPASVIAPSSSVVPKSQPRPSP 646


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 20/77 (25%), Positives = 23/77 (29%), Gaps = 3/77 (3%)
 Frame = +3

Query: 447 PPEEXTGNPVXPXQXPLXRKNPXXXGNPKP---PXXQKKXPGXXLFRVXKTPXLXXFXPP 617
           PP   +  P+ P   P     P     P     P      PG    R    P +    PP
Sbjct: 264 PPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPG----RTPGPPGMPGMPPP 319

Query: 618 XKXXXFXPPPXXGAPXP 668
                F PP   G P P
Sbjct: 320 PPPSRFGPPGMGGMPPP 336


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 20/77 (25%), Positives = 23/77 (29%), Gaps = 3/77 (3%)
 Frame = +3

Query: 447 PPEEXTGNPVXPXQXPLXRKNPXXXGNPKP---PXXQKKXPGXXLFRVXKTPXLXXFXPP 617
           PP   +  P+ P   P     P     P     P      PG    R    P +    PP
Sbjct: 274 PPPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPG----RTPGPPGMPGMPPP 329

Query: 618 XKXXXFXPPPXXGAPXP 668
                F PP   G P P
Sbjct: 330 PPPSRFGPPGMGGMPPP 346


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,929,979
Number of Sequences: 27780
Number of extensions: 282912
Number of successful extensions: 1009
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1830096852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)