Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_E01
         (818 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121...    31   1.1  
01_02_0007 + 10132380-10133201                                         31   1.1  
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330...    30   2.5  

>10_01_0100 +
           1209424-1209538,1210373-1211073,1211158-1211379,
           1211452-1211878,1212091-1213219,1213623-1213746,
           1214207-1214278,1215480-1215578,1215617-1215640,
           1215704-1215745,1215815-1215895,1215983-1216114,
           1216115-1216196,1216271-1216365,1218499-1218570,
           1218676-1218792,1219379-1219447,1219521-1219587,
           1219886-1220025
          Length = 1269

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 16/61 (26%), Positives = 21/61 (34%)
 Frame = +3

Query: 570 PXPSPXPXPSTSXLXQXXPIXXXPXPXXHXIXLLLXXXPXVPXLRXXLPXXXPNXPPPXL 749
           P P P P P ++      P    P P  + +       P  P +        P  PPP L
Sbjct: 568 PPPPPPPLPQSNYASSQPPPPPPPPPLPNCLVPSPPPPPPPPPILPNRSVPPPPPPPPPL 627

Query: 750 P 752
           P
Sbjct: 628 P 628



 Score = 29.9 bits (64), Expect = 2.5
 Identities = 17/59 (28%), Positives = 19/59 (32%)
 Frame = +1

Query: 568 SQXPHPXXXPPHPXSXXPXXXPXXPSLPXXXSPSXXXXXPXFPXCAXXXLXXXPTXXPP 744
           SQ P P   PP P    P   P  P  P   + S     P  P      +   P   PP
Sbjct: 583 SQPPPPPPPPPLPNCLVPSPPPPPPPPPILPNRSVPPPPPPPPPLPNHSVLPPPPPPPP 641


>01_02_0007 + 10132380-10133201
          Length = 273

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 21/62 (33%), Positives = 24/62 (38%)
 Frame = +3

Query: 567 LPXPSPXPXPSTSXLXQXXPIXXXPXPXXHXIXLLLXXXPXVPXLRXXLPXXXPNXPPPX 746
           LP P+P P P         P+   P P  +    L    P  P L   LP   PN PP  
Sbjct: 119 LPQPNPNPQPLPQPDPNAPPLPL-PQPNPNNPQPLPQPDPNAPSL--PLPQPDPNAPPLP 175

Query: 747 LP 752
           LP
Sbjct: 176 LP 177



 Score = 28.7 bits (61), Expect = 5.9
 Identities = 20/62 (32%), Positives = 21/62 (33%)
 Frame = +3

Query: 567 LPXPSPXPXPSTSXLXQXXPIXXXPXPXXHXIXLLLXXXPXVPXLRXXLPXXXPNXPPPX 746
           LP P P P P+   L Q  P    P P        L      P     LP   PN P   
Sbjct: 105 LPQPGPQPNPNPQPLPQPNP-NPQPLPQPDPNAPPLPLPQPNPNNPQPLPQPDPNAPSLP 163

Query: 747 LP 752
           LP
Sbjct: 164 LP 165


>08_01_0375 -
           3307206-3307316,3307870-3307965,3308061-3308132,
           3308247-3308315,3308427-3308513,3308753-3308858,
           3309118-3309237,3309327-3309406,3309497-3309878,
           3310746-3310814,3311460-3312202
          Length = 644

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 16/55 (29%), Positives = 17/55 (30%)
 Frame = +1

Query: 487 PQXXXSPPTPXXXXXXXXXXRXXXXXLSQXPHPXXXPPHPXSXXPXXXPXXPSLP 651
           PQ    PP P                 SQ P P   PP P    P   P  P+ P
Sbjct: 77  PQQQQPPPPPQMYYQPPPPPPPYGVNSSQPPPPPPPPPSPPPSAPPPPPPPPTQP 131


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,994,133
Number of Sequences: 37544
Number of extensions: 161085
Number of successful extensions: 456
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 438
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2244686244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)