Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_D24
         (781 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    29   0.57 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   4.0  
SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    25   9.2  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    25   9.2  

>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 29.5 bits (63), Expect = 0.57
 Identities = 17/57 (29%), Positives = 18/57 (31%)
 Frame = -2

Query: 543 AXRPGXXGXKXXXXXAXDGVXXEXGGLGXDRXXGXGXXTGXXRXXGXGXGGLXGXXG 373
           A  PG  G +        G     GG G  R    G   G  R    G GG  G  G
Sbjct: 2   AYTPGSRGGRGGSRGGRGGFNGGRGGFGGGRGGARGGGRGGARGGRGGRGGARGGRG 58


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 14/40 (35%), Positives = 16/40 (40%)
 Frame = +2

Query: 374  PXXPXKPPXPXPXXRXXPVXXPXPXXRSXPSPPXSXXTPS 493
            P     PP P P     PV  P P  ++ P P  S   PS
Sbjct: 1211 PPPSTAPPVPTPSAGLPPV--PVPTAKAPPVPAPSSEAPS 1248


>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 319 LRSLISNLSNTCDLTPLPEWPCEQSAW 239
           +RS+   L    D+TP+ +W  ++S W
Sbjct: 109 VRSIEQELEQLRDVTPINQWKRKRSLW 135


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 13/38 (34%), Positives = 13/38 (34%)
 Frame = +2

Query: 359 LXVSXPXXPXKPPXPXPXXRXXPVXXPXPXXRSXPSPP 472
           L  S P  P     P P     PV  P P     P PP
Sbjct: 728 LLKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPP 765


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,418,784
Number of Sequences: 5004
Number of extensions: 16270
Number of successful extensions: 56
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)