Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_D23
         (758 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z22179-5|CAA80162.2|  786|Caenorhabditis elegans Hypothetical pr...    29   4.7  
AF016430-2|AAB65371.1| 1106|Caenorhabditis elegans Gex interacti...    28   8.3  

>Z22179-5|CAA80162.2|  786|Caenorhabditis elegans Hypothetical
           protein F58A4.5 protein.
          Length = 786

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 19/72 (26%), Positives = 33/72 (45%)
 Frame = +1

Query: 274 SEVTSIREVGDEAPERRGWRAAACTRDTRGALPASPSRLDTDICHNIEMNAETAASGGLV 453
           SE  SI E   +A E+    AA   + ++ +  +S    +     N+E  A  AAS  L 
Sbjct: 394 SESASISE-SSQASEQAVMAAAMSAKSSKKSESSSKDESEDSASLNLEQKASAAASAALA 452

Query: 454 AGGKAAAESRSR 489
           +  K+ +  +S+
Sbjct: 453 SKSKSDSSDQSK 464


>AF016430-2|AAB65371.1| 1106|Caenorhabditis elegans Gex interacting
           protein protein 6 protein.
          Length = 1106

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +3

Query: 573 RASTSPRSWLCTGLDRSVXSHAPDSNILDFPFVXHXNPXRSLLVHPK 713
           ++ T+PRS  CT  D    S   D  I+D P   H +P  +L   PK
Sbjct: 608 KSITTPRSVACTPNDPERVSPPEDGEIVDTP--PHSSPQATLNPAPK 652


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,578,652
Number of Sequences: 27780
Number of extensions: 170770
Number of successful extensions: 574
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 573
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1809061256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)