Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_D22
         (728 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    25   0.73 
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   2.9  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   9.0  

>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 25.0 bits (52), Expect = 0.73
 Identities = 11/19 (57%), Positives = 13/19 (68%)
 Frame = -3

Query: 465 GSSHQETGRYTLQDNEGPV 409
           G SHQE+G+    DNE PV
Sbjct: 51  GISHQESGQPKQVDNETPV 69


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +1

Query: 658 QVLILGI*FNQLHSVF 705
           Q+L LG+ FN LH ++
Sbjct: 5   QILTLGVLFNTLHIIY 20


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = -1

Query: 299 EPLELSTPSPQSMQSAIEAANDE 231
           +PL +S P P S Q+  +  N +
Sbjct: 758 QPLSVSIPPPPSAQNVPQNTNSQ 780


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 144,709
Number of Sequences: 438
Number of extensions: 2604
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)