Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_T7_D21
(784 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 33 0.061
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 32 0.11
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 28 1.7
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 4.0
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 4.0
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 32.7 bits (71), Expect = 0.061
Identities = 32/137 (23%), Positives = 38/137 (27%), Gaps = 9/137 (6%)
Frame = +3
Query: 381 PQAPXXPLPPXXXXXPPKXAXXALXGXXP---RAXXAXXXXXLPPTXXSXPXPXRAXRPX 551
P A P+P PP A P A PP S A P
Sbjct: 1007 PLARVPPVPKLSSKAPPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPV 1066
Query: 552 XXPXXXLXXXXXPXGXSXXXXPIXLPRXXSXPXXXXPGPKPPXSXXPGPXP------XXX 713
P + P G P +P P PKP + P P P
Sbjct: 1067 PAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKP 1126
Query: 714 SXXAPXLPLXXXXXPXP 764
S AP +P+ P P
Sbjct: 1127 SVAAPPVPVPSGAPPVP 1143
Score = 31.9 bits (69), Expect = 0.11
Identities = 32/139 (23%), Positives = 34/139 (24%), Gaps = 2/139 (1%)
Frame = +1
Query: 370 PXPTPKPXXXPYPPXXXXXPXKXPPXLXXVCXXXXXXPXXXXVCPQQXXPPPXXXXPPGX 549
P P P P P P P V P P P P G
Sbjct: 1023 PVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGA 1082
Query: 550 XRXPXXXSXXXXVRXACPAXTXXSXSXXXPPXPXP--XXPVQSHPXVXPRGPVXXXXPLX 723
P + + A S PP P P PV P PV P
Sbjct: 1083 PPVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPV 1142
Query: 724 XPXSPXXPXXXPXXPXAPP 780
S P P APP
Sbjct: 1143 PKPSVAAP-PVPAPSGAPP 1160
Score = 27.9 bits (59), Expect = 1.7
Identities = 26/127 (20%), Positives = 30/127 (23%)
Frame = +3
Query: 399 PLPPXXXXXPPKXAXXALXGXXPRAXXAXXXXXLPPTXXSXPXPXRAXRPXXXPXXXLXX 578
P+P PP P+ A P P P A P P +
Sbjct: 1122 PVPKPSVAAPPVPVPSGAP-PVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPP 1180
Query: 579 XXXPXGXSXXXXPIXLPRXXSXPXXXXPGPKPPXSXXPGPXPXXXSXXAPXLPLXXXXXP 758
P P P P PP + P P P P P
Sbjct: 1181 VPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVP 1240
Query: 759 XPXXRAP 779
P AP
Sbjct: 1241 APSSEAP 1247
Score = 27.1 bits (57), Expect = 3.0
Identities = 29/125 (23%), Positives = 33/125 (26%), Gaps = 1/125 (0%)
Frame = +2
Query: 326 PAXAXTPXPTXXTXRXXPPPSPXXPPTPXLPSPXPXXRXXXSXRXVXXXXXXXXXXXFAP 505
P+ A P P P PS PP P P + + V AP
Sbjct: 1107 PSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSG-------AP 1159
Query: 506 NXXXXPXAXAXXPAXXXXXXPXXXXXXSXXXV-XPXPXXPXPXXXLXXPXXXPRSKATPX 682
A PA P V P P P + P P S A P
Sbjct: 1160 PVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPV 1219
Query: 683 SXPGA 697
P A
Sbjct: 1220 PTPSA 1224
Score = 26.6 bits (56), Expect = 4.0
Identities = 16/61 (26%), Positives = 18/61 (29%)
Frame = +3
Query: 522 PXPXRAXRPXXXPXXXLXXXXXPXGXSXXXXPIXLPRXXSXPXXXXPGPKPPXSXXPGPX 701
P P A P P + P G P P P PKP + P P
Sbjct: 1095 PKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPA 1154
Query: 702 P 704
P
Sbjct: 1155 P 1155
Score = 25.4 bits (53), Expect = 9.3
Identities = 28/134 (20%), Positives = 32/134 (23%), Gaps = 1/134 (0%)
Frame = +1
Query: 382 PKPXXXPYPPXXXXXPXKXPPXLXXVCXXXXXXPXXXXVCPQQXXPPPXXXXPPGXXRXP 561
P P PP P V P P+ P P G P
Sbjct: 1084 PVPAPSGIPPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVP 1143
Query: 562 XXXSXXXXVRXACPAXTXXSXSXXXPPXPXPXXPVQSHPXVXPRGPVXXXXPLXXP-XSP 738
V A S PP P P + P P P+ P +P
Sbjct: 1144 KPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPK-----PAAGVPPVPPPSEAP 1198
Query: 739 XXPXXXPXXPXAPP 780
P P PP
Sbjct: 1199 PVPKPSVGVPPVPP 1212
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.9 bits (69), Expect = 0.11
Identities = 19/62 (30%), Positives = 22/62 (35%), Gaps = 2/62 (3%)
Frame = +1
Query: 601 PAXTXXSXSXXXPPXPXPXXPVQSHPXVXPRGPVXXXXPLXXPXSPXXPXXXP--XXPXA 774
P S + PP P P P +S P + P G P P P P P A
Sbjct: 376 PPPLSSSRAVSNPPAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPPSAPPSLPPSA 435
Query: 775 PP 780
PP
Sbjct: 436 PP 437
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 27.9 bits (59), Expect = 1.7
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +2
Query: 377 PPPSPXXPPTPXLPS 421
PPP+P PP P LP+
Sbjct: 806 PPPAPLPPPAPPLPT 820
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 4.0
Identities = 12/32 (37%), Positives = 15/32 (46%)
Frame = +2
Query: 323 GPAXAXTPXPTXXTXRXXPPPSPXXPPTPXLP 418
G A + PT + P P+P PP P LP
Sbjct: 216 GRAVSPEIPPTYTPKQADPLPAPPPPPPPTLP 247
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 26.6 bits (56), Expect = 4.0
Identities = 10/29 (34%), Positives = 11/29 (37%)
Frame = +2
Query: 344 PXPTXXTXRXXPPPSPXXPPTPXLPSPXP 430
P P P P P PP P + P P
Sbjct: 735 PPPAVIVPTPAPAPIPVPPPAPIMGGPPP 763
Score = 25.8 bits (54), Expect = 7.0
Identities = 12/35 (34%), Positives = 12/35 (34%)
Frame = +2
Query: 326 PAXAXTPXPTXXTXRXXPPPSPXXPPTPXLPSPXP 430
PA A P P PPP P P P P
Sbjct: 744 PAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,456,529
Number of Sequences: 5004
Number of extensions: 17449
Number of successful extensions: 85
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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