Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_D19
         (797 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_05_0501 + 22764978-22765896,22766087-22766349,22766613-227668...    29   4.3  
11_01_0385 + 2915532-2916482                                           28   9.9  
01_01_0715 - 5542648-5543219,5543352-5543544                           28   9.9  

>01_05_0501 +
           22764978-22765896,22766087-22766349,22766613-22766836,
           22767419-22767749,22767968-22768372
          Length = 713

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 19/55 (34%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
 Frame = +1

Query: 367 GXXXXPSPXPXSPXPPXXPXXPXXSXXSXGXXXSXXXPF-RXFSXTPXPTPXXPL 528
           G    PSP P  P PP  P  P     S     S   P+    S  P P P  PL
Sbjct: 69  GIAVHPSPPPPPPPPPPPPPVPVPPAYS---VTSSVPPYSMTSSLPPSPRPPPPL 120



 Score = 29.1 bits (62), Expect = 4.3
 Identities = 15/49 (30%), Positives = 16/49 (32%)
 Frame = +1

Query: 382 PSPXPXSPXPPXXPXXPXXSXXSXGXXXSXXXPFRXFSXTPXPTPXXPL 528
           P P P  P PP  P  P  S  S     S           P P P  P+
Sbjct: 77  PPPPPPPPPPPPVPVPPAYSVTSSVPPYSMTSSLPPSPRPPPPLPFSPI 125


>11_01_0385 + 2915532-2916482
          Length = 316

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 14/49 (28%), Positives = 17/49 (34%)
 Frame = +1

Query: 388 PXPXSPXPPXXPXXPXXSXXSXGXXXSXXXPFRXFSXTPXPTPXXPLGG 534
           P P +  PP  P  P  +        +   P   F   P PTP  P  G
Sbjct: 194 PHPGNKWPPLPPFHPPPTPAWPHPGGNKWPPLPPFPSHPPPTPAWPQPG 242


>01_01_0715 - 5542648-5543219,5543352-5543544
          Length = 254

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 14/51 (27%), Positives = 17/51 (33%)
 Frame = +1

Query: 382 PSPXPXSPXPPXXPXXPXXSXXSXGXXXSXXXPFRXFSXTPXPTPXXPLGG 534
           P   P +P P   P  P           S   P    + +P P P  P GG
Sbjct: 148 PPTVPAAPTPRPSPPPPAAGTNGTARAPSPPVPAPAPAGSPPPPPPPPAGG 198


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,922,455
Number of Sequences: 37544
Number of extensions: 243601
Number of successful extensions: 762
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)