Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_D18
         (1231 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    33   0.081
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.25 

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 33.1 bits (72), Expect = 0.081
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -1

Query: 679 PPPPPXXXXKKKXPPPPPP 623
           PPPPP      + PPPPPP
Sbjct: 12  PPPPPGFEPPSQPPPPPPP 30



 Score = 32.3 bits (70), Expect = 0.14
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -1

Query: 679 PPPPPXXXXKKKXPPPPPP 623
           PPPPP        PPPPPP
Sbjct: 11  PPPPPPGFEPPSQPPPPPP 29



 Score = 30.7 bits (66), Expect = 0.43
 Identities = 13/36 (36%), Positives = 14/36 (38%)
 Frame = -2

Query: 678 PPPPPXXXXKKKXPPPPPPXXXXXXXXKKKKXKXXG 571
           PPPPP    +    PPPPP        K K     G
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPPGYVKKRKNKTPAQSG 45



 Score = 29.1 bits (62), Expect = 1.3
 Identities = 13/49 (26%), Positives = 19/49 (38%)
 Frame = -2

Query: 678 PPPPPXXXXKKKXPPPPPPXXXXXXXXKKKKXKXXGGXFFXKKKKKXKK 532
           PPPPP     +    PPPP        +K K     G    +  ++ +K
Sbjct: 9   PPPPPPPPGFEPPSQPPPPPPPGYVKKRKNKTPAQSGNLEKQLNERARK 57


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.5 bits (68), Expect = 0.25
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -2

Query: 678 PPPPPXXXXKKKXPPPPPP 622
           PPPPP        PPPPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPPP 780



 Score = 31.5 bits (68), Expect = 0.25
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -1

Query: 679 PPPPPXXXXKKKXPPPPPP 623
           PPPPP        PPPPPP
Sbjct: 764 PPPPPGVAGAGPPPPPPPP 782



 Score = 31.1 bits (67), Expect = 0.33
 Identities = 11/19 (57%), Positives = 11/19 (57%)
 Frame = -1

Query: 679 PPPPPXXXXKKKXPPPPPP 623
           PPPPP        PPPPPP
Sbjct: 763 PPPPPPGVAGAGPPPPPPP 781



 Score = 27.9 bits (59), Expect = 3.1
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -2

Query: 678 PPPPPXXXXKKKXPPPPPP 622
           PPPP         PPPPPP
Sbjct: 765 PPPPGVAGAGPPPPPPPPP 783



 Score = 27.5 bits (58), Expect = 4.0
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -1

Query: 679 PPPPPXXXXKKKXPPPPPP 623
           P PPP        PPPPPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPP 768



 Score = 27.5 bits (58), Expect = 4.0
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = -1

Query: 679 PPPPPXXXXKKKXPPPPPP 623
           PPPPP         PPPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPP 779


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,530,008
Number of Sequences: 5004
Number of extensions: 21081
Number of successful extensions: 298
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 667380970
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)