Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_T7_D17
(773 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z99709-10|CAB16856.1| 448|Caenorhabditis elegans Hypothetical p... 37 0.014
Z81070-8|CAB03001.1| 449|Caenorhabditis elegans Hypothetical pr... 37 0.014
D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin... 37 0.014
D14965-1|BAA03610.1| 448|Caenorhabditis elegans alpha-2 tubulin... 37 0.014
Z81523-9|CAB04246.2| 464|Caenorhabditis elegans Hypothetical pr... 36 0.024
AB017191-1|BAA32601.1| 435|Caenorhabditis elegans alpha tubulin... 36 0.024
U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin M... 36 0.042
D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin... 36 0.042
AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensor... 36 0.042
AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin... 36 0.042
U40420-4|AAA81432.2| 456|Caenorhabditis elegans Tubulin, alpha ... 35 0.056
Z37092-12|CAA85463.1| 448|Caenorhabditis elegans Hypothetical p... 34 0.13
AL023832-2|CAA19476.1| 448|Caenorhabditis elegans Hypothetical ... 34 0.13
Z78062-1|CAB01495.1| 447|Caenorhabditis elegans Hypothetical pr... 33 0.17
Z81134-1|CAB03447.1| 444|Caenorhabditis elegans Hypothetical pr... 33 0.23
>Z99709-10|CAB16856.1| 448|Caenorhabditis elegans Hypothetical
protein C47B2.3 protein.
Length = 448
Score = 37.1 bits (82), Expect = 0.014
Identities = 19/40 (47%), Positives = 20/40 (50%)
Frame = -2
Query: 478 VPXXVXXAXAXIKTXXTMAIXXXGPTAXKXGXNYQPPXXV 359
VP V A A IKT T+ PT K G NYQPP V
Sbjct: 322 VPKDVNTAIAAIKTKRTIQFVDWCPTGFKVGINYQPPTVV 361
>Z81070-8|CAB03001.1| 449|Caenorhabditis elegans Hypothetical
protein F26E4.8 protein.
Length = 449
Score = 37.1 bits (82), Expect = 0.014
Identities = 19/40 (47%), Positives = 20/40 (50%)
Frame = -2
Query: 478 VPXXVXXAXAXIKTXXTMAIXXXGPTAXKXGXNYQPPXXV 359
VP V A A IKT T+ PT K G NYQPP V
Sbjct: 322 VPKDVNTAIAAIKTKRTIQFVDWCPTGFKVGINYQPPTVV 361
>D16439-1|BAA03909.1| 449|Caenorhabditis elegans alpha-1 tubulin
protein.
Length = 449
Score = 37.1 bits (82), Expect = 0.014
Identities = 19/40 (47%), Positives = 20/40 (50%)
Frame = -2
Query: 478 VPXXVXXAXAXIKTXXTMAIXXXGPTAXKXGXNYQPPXXV 359
VP V A A IKT T+ PT K G NYQPP V
Sbjct: 322 VPKDVNTAIAAIKTKRTIQFVDWCPTGFKVGINYQPPTVV 361
>D14965-1|BAA03610.1| 448|Caenorhabditis elegans alpha-2 tubulin
protein.
Length = 448
Score = 37.1 bits (82), Expect = 0.014
Identities = 19/40 (47%), Positives = 20/40 (50%)
Frame = -2
Query: 478 VPXXVXXAXAXIKTXXTMAIXXXGPTAXKXGXNYQPPXXV 359
VP V A A IKT T+ PT K G NYQPP V
Sbjct: 322 VPKDVNTAIAAIKTKRTIQFVDWCPTGFKVGINYQPPTVV 361
>Z81523-9|CAB04246.2| 464|Caenorhabditis elegans Hypothetical
protein F32H2.9 protein.
Length = 464
Score = 36.3 bits (80), Expect = 0.024
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = -2
Query: 478 VPXXVXXAXAXIKTXXTMAIXXXGPTAXKXGXNYQPPXXV 359
VP + A A +KT T+ PT K G NYQPP V
Sbjct: 330 VPKDINSAIAAVKTKRTVQFVEWCPTGFKVGINYQPPTVV 369
>AB017191-1|BAA32601.1| 435|Caenorhabditis elegans alpha tubulin
(tba-6) protein.
Length = 435
Score = 36.3 bits (80), Expect = 0.024
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = -2
Query: 478 VPXXVXXAXAXIKTXXTMAIXXXGPTAXKXGXNYQPPXXV 359
VP + A A +KT T+ PT K G NYQPP V
Sbjct: 302 VPKDINSAIAAVKTKRTVQFVEWCPTGFKVGINYQPPTVV 341
>U65429-1|AAB48241.1| 450|Caenorhabditis elegans alpha-tubulin
MEC-12 protein.
Length = 450
Score = 35.5 bits (78), Expect = 0.042
Identities = 18/40 (45%), Positives = 20/40 (50%)
Frame = -2
Query: 478 VPXXVXXAXAXIKTXXTMAIXXXGPTAXKXGXNYQPPXXV 359
VP V A A IKT ++ PT K G NYQPP V
Sbjct: 324 VPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVV 363
>D21134-1|BAA22203.1| 449|Caenorhabditis elegans alpha-3 tubulin
protein.
Length = 449
Score = 35.5 bits (78), Expect = 0.042
Identities = 18/40 (45%), Positives = 20/40 (50%)
Frame = -2
Query: 478 VPXXVXXAXAXIKTXXTMAIXXXGPTAXKXGXNYQPPXXV 359
VP V A A IKT ++ PT K G NYQPP V
Sbjct: 323 VPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVV 362
>AF003387-1|AAB54263.2| 450|Caenorhabditis elegans Mechanosensory
abnormality protein12 protein.
Length = 450
Score = 35.5 bits (78), Expect = 0.042
Identities = 18/40 (45%), Positives = 20/40 (50%)
Frame = -2
Query: 478 VPXXVXXAXAXIKTXXTMAIXXXGPTAXKXGXNYQPPXXV 359
VP V A A IKT ++ PT K G NYQPP V
Sbjct: 324 VPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVV 363
>AB017190-1|BAA32600.1| 450|Caenorhabditis elegans Alpha tubulin
(tba-3) protein.
Length = 450
Score = 35.5 bits (78), Expect = 0.042
Identities = 18/40 (45%), Positives = 20/40 (50%)
Frame = -2
Query: 478 VPXXVXXAXAXIKTXXTMAIXXXGPTAXKXGXNYQPPXXV 359
VP V A A IKT ++ PT K G NYQPP V
Sbjct: 324 VPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVV 363
>U40420-4|AAA81432.2| 456|Caenorhabditis elegans Tubulin, alpha
protein 9 protein.
Length = 456
Score = 35.1 bits (77), Expect = 0.056
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = -2
Query: 478 VPXXVXXAXAXIKTXXTMAIXXXGPTAXKXGXNYQPPXXV 359
VP V A A +KT ++ PT K G NYQPP V
Sbjct: 329 VPKDVNAAIASVKTKRSIQFVDWCPTGFKVGINYQPPTVV 368
>Z37092-12|CAA85463.1| 448|Caenorhabditis elegans Hypothetical
protein F44F4.11 protein.
Length = 448
Score = 33.9 bits (74), Expect = 0.13
Identities = 17/40 (42%), Positives = 19/40 (47%)
Frame = -2
Query: 478 VPXXVXXAXAXIKTXXTMAIXXXGPTAXKXGXNYQPPXXV 359
VP V A IKT ++ PT K G NYQPP V
Sbjct: 322 VPKDVNTAITAIKTKRSVQFVDWCPTGFKVGINYQPPTVV 361
>AL023832-2|CAA19476.1| 448|Caenorhabditis elegans Hypothetical
protein F44F4.11 protein.
Length = 448
Score = 33.9 bits (74), Expect = 0.13
Identities = 17/40 (42%), Positives = 19/40 (47%)
Frame = -2
Query: 478 VPXXVXXAXAXIKTXXTMAIXXXGPTAXKXGXNYQPPXXV 359
VP V A IKT ++ PT K G NYQPP V
Sbjct: 322 VPKDVNTAITAIKTKRSVQFVDWCPTGFKVGINYQPPTVV 361
>Z78062-1|CAB01495.1| 447|Caenorhabditis elegans Hypothetical
protein F16D3.1 protein.
Length = 447
Score = 33.5 bits (73), Expect = 0.17
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = -2
Query: 478 VPXXVXXAXAXIKTXXTMAIXXXGPTAXKXGXNYQPPXXV 359
VP + A + IKT + PT K G NYQPP V
Sbjct: 324 VPKEINSAISTIKTKRAIQFVDWCPTGFKVGINYQPPTVV 363
>Z81134-1|CAB03447.1| 444|Caenorhabditis elegans Hypothetical
protein T28D6.2 protein.
Length = 444
Score = 33.1 bits (72), Expect = 0.23
Identities = 16/40 (40%), Positives = 19/40 (47%)
Frame = -2
Query: 478 VPXXVXXAXAXIKTXXTMAIXXXGPTAXKXGXNYQPPXXV 359
VP V A IKT ++ PT K G NYQPP +
Sbjct: 319 VPKDVSAAIKSIKTQRSVQFVDWCPTGFKVGLNYQPPTVI 358
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,689,754
Number of Sequences: 27780
Number of extensions: 84566
Number of successful extensions: 197
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 197
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1861650246
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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