Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_T7_D16
(1079 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0005 + 11568545-11569119,11569179-11569191 32 0.91
02_05_0686 - 30900748-30902167,30903442-30904742 31 1.6
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542... 31 2.1
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 29 3.3
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 30 3.7
07_01_0080 + 587674-588510 30 3.7
10_08_0544 - 18655186-18655567,18656835-18657151 29 4.8
05_01_0028 + 182528-183852,183967-184127,184872-185116,185330-18... 29 4.8
10_06_0039 - 9966744-9967535,9968241-9968482,9969021-9969223,996... 29 8.4
09_04_0081 - 14400293-14400397,14400953-14401036,14401144-144012... 29 8.4
07_03_1382 - 26170563-26170631,26171151-26171843 29 8.4
>01_03_0005 + 11568545-11569119,11569179-11569191
Length = 195
Score = 31.9 bits (69), Expect = 0.91
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = +3
Query: 705 GGGGGGXXXXXXXXXXPPPXXGGGG 779
GGGGGG PPP GGGG
Sbjct: 78 GGGGGGGGGTVMYTSPPPPYSGGGG 102
Score = 29.5 bits (63), Expect = 4.8
Identities = 12/24 (50%), Positives = 12/24 (50%)
Frame = +2
Query: 707 GGGGGXXXXXXXXXXPPPXXGGGG 778
GGGGG PPP GGGG
Sbjct: 99 GGGGGSSTGGGGIYYPPPTGGGGG 122
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 31.1 bits (67), Expect = 1.6
Identities = 13/30 (43%), Positives = 13/30 (43%)
Frame = -2
Query: 778 PPPPXXGGGXXXXXXXXXXPPPPPPXXXKK 689
PPPP G PPPPPP KK
Sbjct: 345 PPPPPAKGPPPPPPPKGPSPPPPPPPGGKK 374
>03_02_0071 +
5425722-5427154,5427259-5427464,5428445-5428686,
5428788-5429570
Length = 887
Score = 30.7 bits (66), Expect = 2.1
Identities = 11/20 (55%), Positives = 11/20 (55%)
Frame = +3
Query: 852 PPPPPPXPKXXXXXXXXPPP 911
PPPPPP PK PPP
Sbjct: 358 PPPPPPPPKLNTAPKPPPPP 377
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 28.7 bits (61), Expect = 8.4
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +3
Query: 852 PPPPPPXPKXXXXXXXXPPP 911
PPPPPP P PPP
Sbjct: 107 PPPPPPPPSPPPSAPPPPPP 126
Score = 25.0 bits (52), Expect(2) = 3.3
Identities = 9/19 (47%), Positives = 9/19 (47%)
Frame = +3
Query: 855 PPPPPXPKXXXXXXXXPPP 911
PPPPP P PPP
Sbjct: 92 PPPPPPPYGVNSSQPPPPP 110
Score = 23.4 bits (48), Expect(2) = 3.3
Identities = 7/8 (87%), Positives = 7/8 (87%)
Frame = +3
Query: 852 PPPPPPXP 875
PPPPPP P
Sbjct: 55 PPPPPPGP 62
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 29.9 bits (64), Expect = 3.7
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = -2
Query: 778 PPPPXXGGGXXXXXXXXXXPPPPPP 704
PPPP G PPPPPP
Sbjct: 549 PPPPPPSGNKPAFSPPPPPPPPPPP 573
Score = 29.1 bits (62), Expect = 6.4
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = -2
Query: 778 PPPPXXGGGXXXXXXXXXXPPPPPP 704
PPPP G PPPPPP
Sbjct: 548 PPPPPPPSGNKPAFSPPPPPPPPPP 572
Score = 29.1 bits (62), Expect = 6.4
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = -2
Query: 778 PPPPXXGGGXXXXXXXXXXPPPPPP 704
PPPP G PPPPPP
Sbjct: 550 PPPPPSGNKPAFSPPPPPPPPPPPP 574
Score = 29.1 bits (62), Expect = 6.4
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +3
Query: 852 PPPPPPXPKXXXXXXXXPPP 911
PPPPPP P+ PPP
Sbjct: 569 PPPPPPLPQSNYASSQPPPP 588
Score = 28.7 bits (61), Expect = 8.4
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +3
Query: 852 PPPPPPXPKXXXXXXXXPPP 911
PPPPPP P PPP
Sbjct: 547 PPPPPPPPSGNKPAFSPPPP 566
Score = 28.7 bits (61), Expect = 8.4
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +3
Query: 852 PPPPPPXPKXXXXXXXXPPP 911
PPPPPP P PPP
Sbjct: 588 PPPPPPLPNCLVPSPPPPPP 607
Score = 28.7 bits (61), Expect = 8.4
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +3
Query: 852 PPPPPPXPKXXXXXXXXPPP 911
PPPPPP P PPP
Sbjct: 621 PPPPPPLPNHSVLPPPPPPP 640
>07_01_0080 + 587674-588510
Length = 278
Score = 29.9 bits (64), Expect = 3.7
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = -2
Query: 778 PPPPXXGGGXXXXXXXXXXPPPPPP 704
PPPP G PPPPPP
Sbjct: 94 PPPPPPSSGSPPPPPPPPPPPPPPP 118
Score = 29.9 bits (64), Expect = 3.7
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = -2
Query: 778 PPPPXXGGGXXXXXXXXXXPPPPPP 704
PPPP G PPPPPP
Sbjct: 95 PPPPPSSGSPPPPPPPPPPPPPPPP 119
Score = 29.1 bits (62), Expect = 6.4
Identities = 11/25 (44%), Positives = 11/25 (44%)
Frame = -2
Query: 778 PPPPXXGGGXXXXXXXXXXPPPPPP 704
PPPP G PPPPPP
Sbjct: 96 PPPPSSGSPPPPPPPPPPPPPPPPP 120
Score = 28.7 bits (61), Expect = 8.4
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +3
Query: 852 PPPPPPXPKXXXXXXXXPPP 911
PPPPPP P PPP
Sbjct: 92 PPPPPPPPSSGSPPPPPPPP 111
>10_08_0544 - 18655186-18655567,18656835-18657151
Length = 232
Score = 29.5 bits (63), Expect = 4.8
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +3
Query: 852 PPPPPPXPKXXXXXXXXPPP 911
PPPPPP P+ PPP
Sbjct: 49 PPPPPPRPRDEPEAEPLPPP 68
>05_01_0028 +
182528-183852,183967-184127,184872-185116,185330-186073
Length = 824
Score = 29.5 bits (63), Expect = 4.8
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +3
Query: 852 PPPPPPXPKXXXXXXXXPPP 911
PPPPPP P+ PPP
Sbjct: 72 PPPPPPAPRPPRRHHRIPPP 91
>10_06_0039 -
9966744-9967535,9968241-9968482,9969021-9969223,
9969333-9970645
Length = 849
Score = 28.7 bits (61), Expect = 8.4
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +3
Query: 852 PPPPPPXPKXXXXXXXXPPP 911
PPPPPP P PPP
Sbjct: 331 PPPPPPPPSRFNNTTPKPPP 350
>09_04_0081 -
14400293-14400397,14400953-14401036,14401144-14401214,
14401293-14401380,14401487-14401678,14401772-14402704
Length = 490
Score = 28.7 bits (61), Expect = 8.4
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +3
Query: 852 PPPPPPXPKXXXXXXXXPPP 911
PPPPPP P PPP
Sbjct: 221 PPPPPPPPSPHRHPAAHPPP 240
>07_03_1382 - 26170563-26170631,26171151-26171843
Length = 253
Score = 28.7 bits (61), Expect = 8.4
Identities = 10/20 (50%), Positives = 10/20 (50%)
Frame = +3
Query: 852 PPPPPPXPKXXXXXXXXPPP 911
PPPPPP P PPP
Sbjct: 185 PPPPPPQPSGDANENPPPPP 204
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,678,567
Number of Sequences: 37544
Number of extensions: 694148
Number of successful extensions: 20764
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 2984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13471
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3222906096
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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