Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_T7_D15
(734 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327... 249 2e-66
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342... 242 2e-64
04_04_0148 - 23114000-23114113,23114215-23114350,23114813-231149... 31 1.3
03_05_1096 - 30364144-30365310,30365825-30365971,30366087-303663... 29 2.9
11_02_0059 - 7883980-7884141,7884423-7884467,7884629-7884715,788... 28 6.7
08_02_0918 - 22617388-22617693,22617799-22617848,22618538-226188... 28 6.7
01_07_0119 + 41179458-41179533,41180455-41180921 28 6.7
>11_01_0427 +
3274817-3274901,3275587-3275697,3275979-3276283,
3276406-3276815,3276942-3277200
Length = 389
Score = 249 bits (610), Expect = 2e-66
Identities = 123/207 (59%), Positives = 151/207 (72%)
Frame = -1
Query: 734 GTMEDKVKWXREHLGEPIPVDSVXAQDEMIDCIGVTQGQRIQRCHFSLAHKEATPVRHTK 555
GT+ DKV + + + IPVD+V +DEMID IGVT+G+ + + P + +
Sbjct: 189 GTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGV-VTRWGVTRLPRKTHR 247
Query: 554 GLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTE 375
GLRKVACIGAWHP+RVS+TVARAGQ GYHHRTEMNKK+Y+IG K G+ + A TE
Sbjct: 248 GLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG-----KSGQE-SHAACTE 301
Query: 374 YDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLK 195
+D +EK ITPMGGFPHYG V D++MIKGCC+GPKKR++TLR+SL T R ALE+I LK
Sbjct: 302 FDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLK 361
Query: 194 FIDTSSKFGHGRFQTPADKAAFMGTLK 114
FIDTSSKFGHGRFQT +K F G LK
Sbjct: 362 FIDTSSKFGHGRFQTTDEKQRFFGKLK 388
>12_01_0435 +
3428552-3428636,3429242-3429352,3429434-3429738,
3429821-3430230,3430323-3430556,3430934-3431378,
3432300-3432390,3433292-3433518,3433786-3433861,
3434009-3434134,3434221-3434384
Length = 757
Score = 242 bits (592), Expect = 2e-64
Identities = 119/199 (59%), Positives = 147/199 (73%)
Frame = -1
Query: 734 GTMEDKVKWXREHLGEPIPVDSVXAQDEMIDCIGVTQGQRIQRCHFSLAHKEATPVRHTK 555
GT+ DKV + + + IPVD+V +DEMID IGVT+G+ + + P + +
Sbjct: 189 GTIADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGV-VTRWGVTRLPRKTHR 247
Query: 554 GLRKVACIGAWHPSRVSFTVARAGQKGYHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTE 375
GLRKVACIGAWHP+RVS+TVARAGQ GYHHRTEMNKK+Y+IG K G+ + A TE
Sbjct: 248 GLRKVACIGAWHPARVSYTVARAGQNGYHHRTEMNKKVYKIG-----KSGQE-SHAACTE 301
Query: 374 YDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAALEKINLK 195
+D +EK ITPMGGFPHYG V D++MIKGCC+GPKKR++TLR+SL T R ALE+I LK
Sbjct: 302 FDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLK 361
Query: 194 FIDTSSKFGHGRFQTPADK 138
FIDTSSKFGHGRFQT +K
Sbjct: 362 FIDTSSKFGHGRFQTTDEK 380
>04_04_0148 -
23114000-23114113,23114215-23114350,23114813-23114912,
23115003-23115113,23115197-23115234,23115359-23115429,
23116998-23117176,23117272-23117389
Length = 288
Score = 30.7 bits (66), Expect = 1.3
Identities = 23/69 (33%), Positives = 33/69 (47%)
Frame = -1
Query: 695 LGEPIPVDSVXAQDEMIDCIGVTQGQRIQRCHFSLAHKEATPVRHTKGLRKVACIGAWHP 516
LG IP+ V + CIG G +I R + H +++PVR+ + L K G +P
Sbjct: 151 LGPTIPIFGVCMG---LQCIGEAFGGKIIRAPSGVMHGKSSPVRYDEELGKALFNGLPNP 207
Query: 515 SRVSFTVAR 489
FT AR
Sbjct: 208 ----FTAAR 212
>03_05_1096 - 30364144-30365310,30365825-30365971,30366087-30366393,
30366541-30366849,30367544-30370567,30370640-30372290,
30372373-30373463,30373544-30373646,30373737-30374439,
30374654-30375783,30375913-30376027,30376504-30376695,
30377443-30377616,30378438-30378494,30378581-30378716,
30378842-30378927,30379023-30379092,30379993-30380021,
30380444-30380456,30380762-30381006
Length = 3582
Score = 29.5 bits (63), Expect = 2.9
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = -1
Query: 371 DLSEKSITPMGGFPHYGEVNNDFVMIKGCCMG 276
D + + +P+GG P YG ++ D + C +G
Sbjct: 1371 DPTSAAASPIGGIPRYGRLSGDVYVCNQCTIG 1402
>11_02_0059 -
7883980-7884141,7884423-7884467,7884629-7884715,
7885746-7885874,7885995-7886151,7886248-7886350,
7887050-7887103,7887334-7887451,7888549-7888700,
7890166-7891852
Length = 897
Score = 28.3 bits (60), Expect = 6.7
Identities = 18/53 (33%), Positives = 24/53 (45%)
Frame = +3
Query: 483 TSTSYSERHPRRMPSSNAGNFPKTLGVSYGGSFFVCQREVTPLYPLXLGDTNA 641
+S S R PS + G PKT + G+ QR +PL L GD +A
Sbjct: 12 SSASKPRRRASPSPSPSPGTAPKTAKNAVAGAGGGGQRRRSPLTDLNSGDASA 64
>08_02_0918 -
22617388-22617693,22617799-22617848,22618538-22618817,
22619654-22620340,22622870-22622944,22623150-22623285,
22624801-22625093,22625776-22626597
Length = 882
Score = 28.3 bits (60), Expect = 6.7
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 10/79 (12%)
Frame = -1
Query: 515 SRVSFTVARAGQKGYHHRTEMNKKIYRIGQG----------IHKKDGKVIKNNASTEYDL 366
++V F + GY H + +N ++ I G IH+ D + E L
Sbjct: 360 AQVIFMNRESANNGYMHTSSVNYELETIRSGTWLDVEHPRKIHRLDLDAVDQQKQLEKYL 419
Query: 365 SEKSITPMGGFPHYGEVNN 309
SEKS P+ FP V++
Sbjct: 420 SEKSNIPIPPFPDSSSVSS 438
>01_07_0119 + 41179458-41179533,41180455-41180921
Length = 180
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Frame = +3
Query: 459 STVMITFLTSTSYSER-HPRRMPSSNAGNFPKTLGVSYGGSFFVCQR 596
+ VM ++ S R PRR P+ ++G ++L S+GG C+R
Sbjct: 2 AAVMKALAVASPISARAQPRRCPAGSSGGPSQSLHSSFGGVSLQCRR 48
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,269,367
Number of Sequences: 37544
Number of extensions: 464435
Number of successful extensions: 1214
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1173
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1208
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1933531792
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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