Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_D13
         (717 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327...   221   3e-58
12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342...   214   5e-56
03_05_1096 - 30364144-30365310,30365825-30365971,30366087-303663...    29   2.8  
08_02_0918 - 22617388-22617693,22617799-22617848,22618538-226188...    28   8.5  

>11_01_0427 +
           3274817-3274901,3275587-3275697,3275979-3276283,
           3276406-3276815,3276942-3277200
          Length = 389

 Score =  221 bits (541), Expect = 3e-58
 Identities = 108/174 (62%), Positives = 125/174 (71%)
 Frame = -2

Query: 635 GVTQGAKGYQRXHFPWXXXXXXXXXXXXXRKVACIGAWHPXRVSFTVARAGQKGYHHRTE 456
           GVT+G KGY+     W             RKVACIGAWHP RVS+TVARAGQ GYHHRTE
Sbjct: 222 GVTKG-KGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTE 280

Query: 455 MNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMG 276
           MNKK+Y+IG     K G+   + A TE+D +EK ITPMGGFPHYG V  D++MIKGCC+G
Sbjct: 281 MNKKVYKIG-----KSGQE-SHAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVG 334

Query: 275 PKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 114
           PKKR++TLR+SL   T R ALE+I LKFIDTSSKFGHGRFQT  +K  F G LK
Sbjct: 335 PKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEKQRFFGKLK 388


>12_01_0435 +
           3428552-3428636,3429242-3429352,3429434-3429738,
           3429821-3430230,3430323-3430556,3430934-3431378,
           3432300-3432390,3433292-3433518,3433786-3433861,
           3434009-3434134,3434221-3434384
          Length = 757

 Score =  214 bits (523), Expect = 5e-56
 Identities = 104/166 (62%), Positives = 121/166 (72%)
 Frame = -2

Query: 635 GVTQGAKGYQRXHFPWXXXXXXXXXXXXXRKVACIGAWHPXRVSFTVARAGQKGYHHRTE 456
           GVT+G KGY+     W             RKVACIGAWHP RVS+TVARAGQ GYHHRTE
Sbjct: 222 GVTKG-KGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSYTVARAGQNGYHHRTE 280

Query: 455 MNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYGEVNNDFVMIKGCCMG 276
           MNKK+Y+IG     K G+   + A TE+D +EK ITPMGGFPHYG V  D++MIKGCC+G
Sbjct: 281 MNKKVYKIG-----KSGQE-SHAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIKGCCVG 334

Query: 275 PKKRIITLRKSLRVHTKRAALEKINLKFIDTSSKFGHGRFQTPADK 138
           PKKR++TLR+SL   T R ALE+I LKFIDTSSKFGHGRFQT  +K
Sbjct: 335 PKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTDEK 380


>03_05_1096 - 30364144-30365310,30365825-30365971,30366087-30366393,
            30366541-30366849,30367544-30370567,30370640-30372290,
            30372373-30373463,30373544-30373646,30373737-30374439,
            30374654-30375783,30375913-30376027,30376504-30376695,
            30377443-30377616,30378438-30378494,30378581-30378716,
            30378842-30378927,30379023-30379092,30379993-30380021,
            30380444-30380456,30380762-30381006
          Length = 3582

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2

Query: 371  DLSEKSITPMGGFPHYGEVNNDFVMIKGCCMG 276
            D +  + +P+GG P YG ++ D  +   C +G
Sbjct: 1371 DPTSAAASPIGGIPRYGRLSGDVYVCNQCTIG 1402


>08_02_0918 -
           22617388-22617693,22617799-22617848,22618538-22618817,
           22619654-22620340,22622870-22622944,22623150-22623285,
           22624801-22625093,22625776-22626597
          Length = 882

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 21/78 (26%), Positives = 32/78 (41%), Gaps = 10/78 (12%)
 Frame = -2

Query: 512 RVSFTVARAGQKGYHHRTEMNKKIYRIGQG----------IHKKDGKVIKNNASTEYDLS 363
           +V F    +   GY H + +N ++  I  G          IH+ D   +      E  LS
Sbjct: 361 QVIFMNRESANNGYMHTSSVNYELETIRSGTWLDVEHPRKIHRLDLDAVDQQKQLEKYLS 420

Query: 362 EKSITPMGGFPHYGEVNN 309
           EKS  P+  FP    V++
Sbjct: 421 EKSNIPIPPFPDSSSVSS 438


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,296,110
Number of Sequences: 37544
Number of extensions: 397914
Number of successful extensions: 873
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1862792824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)