Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_T7_D11
(795 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 35 0.077
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 30 2.2
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 30 2.2
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 30 2.2
Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical pr... 28 6.7
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 28 6.7
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 28 6.7
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 34.7 bits (76), Expect = 0.077
Identities = 18/59 (30%), Positives = 19/59 (32%)
Frame = +3
Query: 555 PXPPXXPPXXPRPPXXXPXXPVXCGHXXXXXSXXLXPXPPTVXAVXXXXPPPXXPXXXP 731
P PP PP PP P P+ C P PP PPP P P
Sbjct: 29 PCPPPPPPMCAPPPLPCPPPPI-CPPQFCPPPPMCPPPPPPPPPPMCPPPPPPMPSYSP 86
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/53 (28%), Positives = 16/53 (30%)
Frame = +3
Query: 573 PPXXPRPPXXXPXXPVXCGHXXXXXSXXLXPXPPTVXAVXXXXPPPXXPXXXP 731
PP P PP P+ C P PP PPP P P
Sbjct: 28 PPCPPPPPPMCAPPPLPC-PPPPICPPQFCPPPPMCPPPPPPPPPPMCPPPPP 79
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/45 (33%), Positives = 15/45 (33%)
Frame = +1
Query: 574 PPXXPGHXPXXXXXPXXAXXXXXXXPXSLXPXPPPSXLSXRXPPP 708
PP PG P P P S P PPP PPP
Sbjct: 728 PPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPP 772
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/45 (33%), Positives = 15/45 (33%)
Frame = +1
Query: 574 PPXXPGHXPXXXXXPXXAXXXXXXXPXSLXPXPPPSXLSXRXPPP 708
PP PG P P P S P PPP PPP
Sbjct: 728 PPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPP 772
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 29.9 bits (64), Expect = 2.2
Identities = 15/45 (33%), Positives = 15/45 (33%)
Frame = +1
Query: 574 PPXXPGHXPXXXXXPXXAXXXXXXXPXSLXPXPPPSXLSXRXPPP 708
PP PG P P P S P PPP PPP
Sbjct: 311 PPPPPGGLPPITGGPPPPPPPGGLPPISGGPPPPPPPPGGCPPPP 355
>Z83227-3|CAB05726.2| 241|Caenorhabditis elegans Hypothetical
protein F45B8.3 protein.
Length = 241
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/72 (23%), Positives = 19/72 (26%)
Frame = +3
Query: 504 IXPXPPXWVXLXGXXXXPXPPXXPPXXPRPPXXXPXXPVXCGHXXXXXSXXLXPXPPTVX 683
+ P PP G P P PP P P P P + P
Sbjct: 89 LPPPPPPASPCCGPSPVPAPCCPPPPAPAAPCCPPPPPPTPSPLVCCKQAPVPENPCCQI 148
Query: 684 AVXXXXPPPXXP 719
PPP P
Sbjct: 149 VAAAMPPPPSAP 160
Score = 27.9 bits (59), Expect = 8.9
Identities = 19/57 (33%), Positives = 19/57 (33%), Gaps = 2/57 (3%)
Frame = +3
Query: 555 PXPPXXP--PXXPRPPXXXPXXPVXCGHXXXXXSXXLXPXPPTVXAVXXXXPPPXXP 719
P P P P P PP P P CG P PP A PPP P
Sbjct: 76 PSPSCCPYVPPAPLPPPPPPASP-CCG--PSPVPAPCCPPPPAPAAPCCPPPPPPTP 129
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 28.3 bits (60), Expect = 6.7
Identities = 19/64 (29%), Positives = 20/64 (31%), Gaps = 2/64 (3%)
Frame = +3
Query: 555 PXPPXXPPXXPRPPXXXPXXPVXCGHXXXXXSXXLXPXPPTVXAVXXXXPP--PXXPXXX 728
P PP P P PP P P S + P PP PP P P
Sbjct: 262 PVPPPPPSVTPMPPPMPPT-PGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPP 320
Query: 729 PXXR 740
P R
Sbjct: 321 PPSR 324
Score = 28.3 bits (60), Expect = 6.7
Identities = 22/84 (26%), Positives = 24/84 (28%), Gaps = 12/84 (14%)
Frame = +3
Query: 504 IXPXPPXWVXLXGXXXXPXPP----XXPPXXPRPPXXXPXXPVXCG--------HXXXXX 647
+ P PP G P PP PP P PP P P G
Sbjct: 270 VTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPG 329
Query: 648 SXXLXPXPPTVXAVXXXXPPPXXP 719
+ P PP PPP P
Sbjct: 330 MGGMPPPPPPGMRYPGGMPPPPPP 353
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 28.3 bits (60), Expect = 6.7
Identities = 19/64 (29%), Positives = 20/64 (31%), Gaps = 2/64 (3%)
Frame = +3
Query: 555 PXPPXXPPXXPRPPXXXPXXPVXCGHXXXXXSXXLXPXPPTVXAVXXXXPP--PXXPXXX 728
P PP P P PP P P S + P PP PP P P
Sbjct: 272 PVPPPPPSVTPMPPPMPPT-PGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPP 330
Query: 729 PXXR 740
P R
Sbjct: 331 PPSR 334
Score = 28.3 bits (60), Expect = 6.7
Identities = 22/84 (26%), Positives = 24/84 (28%), Gaps = 12/84 (14%)
Frame = +3
Query: 504 IXPXPPXWVXLXGXXXXPXPP----XXPPXXPRPPXXXPXXPVXCG--------HXXXXX 647
+ P PP G P PP PP P PP P P G
Sbjct: 280 VTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPGMPGMPPPPPPSRFGPPG 339
Query: 648 SXXLXPXPPTVXAVXXXXPPPXXP 719
+ P PP PPP P
Sbjct: 340 MGGMPPPPPPGMRYPGGMPPPPPP 363
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,116,771
Number of Sequences: 27780
Number of extensions: 150564
Number of successful extensions: 889
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 756
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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