Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_D07
         (714 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    24   1.6  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    23   2.9  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   5.0  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    22   6.6  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    22   6.6  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    22   6.6  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   8.8  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = +2

Query: 380 HRSHLAPPHHRTNSRVPGTPAPGTRQ 457
           H SH A PHH+ ++ +  +  P   Q
Sbjct: 433 HHSHAATPHHQHSTPLAHSSYPAAIQ 458


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 13/54 (24%), Positives = 18/54 (33%)
 Frame = +2

Query: 302 HPVNRTALHPRENPAGRRLGDTP*AVHRSHLAPPHHRTNSRVPGTPAPGTRQPL 463
           HP  R    P+  P   R       ++     PPH R          PG  +P+
Sbjct: 57  HPRLRREAEPKAEPGNNR------PIYIPQPRPPHPRLRREAESEAEPGNNRPV 104


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 5.0
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +2

Query: 140 SPNFSQETTP*KRR 181
           SPN ++ETTP K R
Sbjct: 782 SPNSTKETTPKKER 795


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 6/13 (46%), Positives = 9/13 (69%)
 Frame = -1

Query: 93  GAGVRHNPVRYPP 55
           G G  H+P ++PP
Sbjct: 397 GTGREHDPAKFPP 409


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
           protein.
          Length = 157

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 14/43 (32%), Positives = 17/43 (39%)
 Frame = +2

Query: 302 HPVNRTALHPRENPAGRRLGDTP*AVHRSHLAPPHHRTNSRVP 430
           +P+     HP   P G          H SHL  P  R NS+ P
Sbjct: 17  YPMVVHVYHPYRQPDGMNQCQAVNG-HCSHLCLPAPRINSKSP 58


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
           protein.
          Length = 128

 Score = 21.8 bits (44), Expect = 6.6
 Identities = 14/43 (32%), Positives = 17/43 (39%)
 Frame = +2

Query: 302 HPVNRTALHPRENPAGRRLGDTP*AVHRSHLAPPHHRTNSRVP 430
           +P+     HP   P G          H SHL  P  R NS+ P
Sbjct: 17  YPMVVHVYHPYRQPDGMNQCQAVNG-HCSHLCLPAPRINSKSP 58


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.4 bits (43), Expect = 8.8
 Identities = 9/29 (31%), Positives = 11/29 (37%)
 Frame = +2

Query: 413 TNSRVPGTPAPGTRQPLREMNGSFAPVPP 499
           TN   P  P    R   +E      P+PP
Sbjct: 614 TNQSCPSPPVTTKRDGTQETEERLPPLPP 642


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 193,101
Number of Sequences: 438
Number of extensions: 5205
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22048515
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)