Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_D01
         (730 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0619 - 26180980-26181105,26181329-26181417,26181518-261816...    31   0.71 
07_03_1566 + 27766336-27766393,27766480-27766609,27766728-277667...    31   0.94 

>03_05_0619 -
           26180980-26181105,26181329-26181417,26181518-26181629,
           26181711-26181848,26182004-26182150,26182458-26182532,
           26182627-26182668,26183033-26183152,26183806-26183880,
           26184051-26184113,26184690-26184759,26184877-26185006,
           26185097-26185328
          Length = 472

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 23/90 (25%), Positives = 31/90 (34%)
 Frame = -2

Query: 678 GKXLXFXVXTXXXAMXCAXLFRKLVLXTVPLHCXXFXXIXLPARNXXXSXXXSVMXCXXX 499
           G  +   V T       A   R L    + +         L A N   +   +++ C   
Sbjct: 282 GSMIMIFVRTCESTRLLALTLRNLRFKAISISGQMSQDKRLGALNRFKTKDCNILICTDV 341

Query: 498 ASRXXXXXXXXXXIXMXIXXXSKDYIHRVG 409
           ASR          I   I   SKDY+HRVG
Sbjct: 342 ASRGLDIQGVDVVINYDIPMNSKDYVHRVG 371


>07_03_1566 +
           27766336-27766393,27766480-27766609,27766728-27766797,
           27767134-27767196,27767741-27767815,27768035-27768154,
           27768508-27768549,27768651-27768725,27768909-27769055,
           27769165-27769302,27769448-27769562,27769658-27769746,
           27770062-27770184
          Length = 414

 Score = 31.1 bits (67), Expect = 0.94
 Identities = 23/90 (25%), Positives = 31/90 (34%)
 Frame = -2

Query: 678 GKXLXFXVXTXXXAMXCAXLFRKLVLXTVPLHCXXFXXIXLPARNXXXSXXXSVMXCXXX 499
           G  +   V T       A + R L    + +         L A N   +   +++ C   
Sbjct: 224 GSMIMVFVRTCESTRLLALMLRNLRFKAISISGQMSQDKRLGALNRFRTRDCNILVCTDV 283

Query: 498 ASRXXXXXXXXXXIXMXIXXXSKDYIHRVG 409
           ASR          I       SKDYIHRVG
Sbjct: 284 ASRGLDIQGVDVVINYDFPLNSKDYIHRVG 313


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,914,277
Number of Sequences: 37544
Number of extensions: 82202
Number of successful extensions: 45
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1909952136
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)