Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_C23
         (811 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0299 - 17051570-17052474,17053542-17053755                       28   7.6  
01_05_0501 + 22764978-22765896,22766087-22766349,22766613-227668...    28   7.6  
01_05_0117 - 18300157-18301106,18301149-18301543,18302592-183026...    28   7.6  

>12_02_0299 - 17051570-17052474,17053542-17053755
          Length = 372

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 17/54 (31%), Positives = 17/54 (31%), Gaps = 2/54 (3%)
 Frame = +2

Query: 524 PXPXXXGXXGXAFXFPXXPGLXXXXXXX--YXXXXXWPPTXPPXSPXXPVPXPP 679
           P P         F FP  P L         Y      PP  PP  P  P P PP
Sbjct: 287 PSPPPPPPPAFPFPFPQLPPLPHFPPLPSFYPSPPPPPPPPPPPPPSFPWPFPP 340


>01_05_0501 +
           22764978-22765896,22766087-22766349,22766613-22766836,
           22767419-22767749,22767968-22768372
          Length = 713

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +2

Query: 629 PPTXPPXSPXXPVPXPP 679
           PP  PP  P  PVP PP
Sbjct: 77  PPPPPPPPPPPPVPVPP 93


>01_05_0117 - 18300157-18301106,18301149-18301543,18302592-18302681,
            18303723-18303836,18303903-18304046,18316147-18316312,
            18316396-18317130,18317219-18317422,18317496-18318177,
            18318272-18318528,18318604-18319298,18319345-18319382,
            18319847-18319928,18320018-18320112,18320443-18320526,
            18320601-18320891,18321521-18321853,18321948-18322150,
            18322243-18322399,18322482-18322585,18322675-18322835,
            18323511-18323824,18324317-18324589,18324666-18324967,
            18325459-18325549,18326140-18326190,18326700-18326768,
            18326926-18327017,18327082-18327148,18328582-18328746,
            18329027-18329103,18329572-18329766,18330208-18330275,
            18331081-18331172,18331399-18331522,18331608-18331705,
            18332384-18332997,18333620-18333626
          Length = 2892

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = +2

Query: 236  HHALCSHDHSGSGVRSQVLERLEMRLRSGGGGARPXPFS 352
            H A C+ D  G GVR + +     RLR+G  G+R   ++
Sbjct: 1373 HEAHCAQDRRGDGVRPRQIR----RLRAGEAGSRACTYN 1407


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,348,236
Number of Sequences: 37544
Number of extensions: 209239
Number of successful extensions: 1649
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 978
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1543
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2209429392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)