Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_C22
         (756 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyce...    30   0.41 
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    27   2.9  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   6.7  
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce...    25   8.8  
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.8  
SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyce...    25   8.8  

>SPBC4C3.06 |||actin cytoskeletal protein Syp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 818

 Score = 29.9 bits (64), Expect = 0.41
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = -3

Query: 235 SVDRGSPPTSSGF*LRRGSDVECKSAGESFSGWALKS 125
           S     P  SSGF +  G   E KS GE+ SG  LK+
Sbjct: 241 SASANKPSKSSGFHINNGKSKEEKSHGENESGGKLKN 277


>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = +3

Query: 291 RIEGSETSAVSVRQPVGPPRRCRWCPGIPRWTRTSLPGRDA 413
           R   +E S  S   PVGPP    W P     T+TSL  + A
Sbjct: 128 RFNNAENSGHSNYYPVGPP---EWAPYTRLMTQTSLYAKSA 165


>SPBC23E6.09 |ssn6||transcriptional corepressor
            Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 15/45 (33%), Positives = 18/45 (40%)
 Frame = +1

Query: 268  PSRRCLRGESKALKRRPSQYGSPSGRPDGAAGVPEYPAGPEPACR 402
            P +   R  SK L+      GSPS      A     P  PEPA +
Sbjct: 874  PKKSTQRDSSKKLENSTVVSGSPSSSSKSDAAKSIKPQKPEPALK 918


>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 855

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/55 (23%), Positives = 28/55 (50%)
 Frame = +3

Query: 150 DSPALLHSTSDPLRSQNPDEVGGLPRSTLQPDGAAYPKDAQPTVPSRRIEGSETS 314
           D P L H +S+P  S++  +   +  +++    ++ P +  P+V S  +  + TS
Sbjct: 176 DFPNLAHESSEPSSSRHTADAQSITNASVHLHNSSSPLNRTPSVISDTLAVAITS 230


>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 283 LRGESKALKRRPSQYGSPSGRPDGAA 360
           L   S +  R+P QY SPSG  + AA
Sbjct: 608 LNPTSGSFLRQPMQYSSPSGVSESAA 633


>SPAC22H10.07 |scd2|ral3|scaffold protein Scd2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 536

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = -3

Query: 595 PSPSSRGPEAGIRPYVPAPV 536
           P+ + RG E  + PY+P PV
Sbjct: 348 PNEAGRGDERRVIPYMPGPV 367


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,596,617
Number of Sequences: 5004
Number of extensions: 53899
Number of successful extensions: 139
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)