Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_C21
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt...    26   6.1  
SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces...    25   8.1  
SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyce...    25   8.1  
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe...    25   8.1  

>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
           subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +1

Query: 61  DAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSR 240
           D  +PS  P    +SS+  S  RH  +   +L S     +   D   LRD +  + RVS+
Sbjct: 119 DNLIPSPLPESASRSSSQSSHQRHSRDGRGELGSEHGERRSAMDG--LRDRHIRKVRVSQ 176


>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 312

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 110 VDDFRSWRGVVLGRAASCCDLLRLS 36
           VD FR W  +      SC DLL+LS
Sbjct: 72  VDGFRLWITMEYCDGGSCLDLLKLS 96


>SPBC1773.10c |||asparagine-tRNA ligase Ded81 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 568

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 22/101 (21%), Positives = 43/101 (42%)
 Frame = -2

Query: 356 ASKAEASLAESGKDMLTAEPRESGGSKQCDFTSRVSHSKRETRRRSPFGSRRSMLSVFFL 177
           A +AEA   E+ K+++  EP+++  +K+       +      R        R+   + F+
Sbjct: 103 AKEAEAKRLEAAKNIVLKEPKDAPAAKKIAIIDSTNFRDSRVRVNGWVHRMRTQKGIIFI 162

Query: 176 TRASRLRRSGYNSVRCRGSE*SVDDFRSWRGVVLGRAASCC 54
                + R G   ++C  S   V D  S+  + LG  ++ C
Sbjct: 163 -----ILRDGTGFLQCVLSG-KVYDRASYDFINLGPESTVC 197


>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 317

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 29/135 (21%), Positives = 48/135 (35%), Gaps = 1/135 (0%)
 Frame = -2

Query: 494 LPY*WLVVAIVILLSTRGTAVSDIWFM-HSAERPVVRSYHPRDLCLNASKAEASLAESGK 318
           L Y   + +  I  S  GT  S  +F+  S+  P   S        ++S   +S ++S  
Sbjct: 121 LSYSGTISSTSIAPSMIGTRTSSSYFITSSSSTPSSSSSSSSSSPSSSSSKSSSSSKSSS 180

Query: 317 DMLTAEPRESGGSKQCDFTSRVSHSKRETRRRSPFGSRRSMLSVFFLTRASRLRRSGYNS 138
              ++    S  S     +S  S S + +   S   S     S  F+T  +    S   +
Sbjct: 181 SSSSSSKSSSSSSSSSKSSSSSSSSSKSSASPSSSKSSSKFSSSSFITSTTPASSSSSGA 240

Query: 137 VRCRGSE*SVDDFRS 93
           +       S DD  S
Sbjct: 241 IVSNAKTASTDDSSS 255


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,806,826
Number of Sequences: 5004
Number of extensions: 56249
Number of successful extensions: 135
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)