Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_C19
         (739 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces pomb...    26   4.9  
SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces...    25   8.5  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    25   8.5  

>SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 386

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 11/32 (34%), Positives = 21/32 (65%)
 Frame = +3

Query: 135 ELSYIRTFGAVMHVLRKKPIASISAIKWASTS 230
           ELS + +    ++ ++++P    S++KWASTS
Sbjct: 39  ELSAMMSKDNTLNHVKQEPSDGFSSVKWASTS 70


>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 312

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -2

Query: 111 VDDFRSWRGVVLGRAASCCDLLRLS 37
           VD FR W  +      SC DLL+LS
Sbjct: 72  VDGFRLWITMEYCDGGSCLDLLKLS 96


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 20/68 (29%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
 Frame = +2

Query: 23  SPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLR-SRDARVKKKTDSI 199
           S  +  S   SQH   L    P  E+KS  D S PR +   +      R  R  K  D+ 
Sbjct: 134 SSSSSSSSQSSQHSTHLQFQIPSNEKKSLDDPS-PRRKPSFFSKSNLKRKYRYLKNPDAW 192

Query: 200 DLRDQMGF 223
           +L   + F
Sbjct: 193 NLPPSLQF 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,628,575
Number of Sequences: 5004
Number of extensions: 24115
Number of successful extensions: 55
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)