Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_C13
         (1198 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      36   0.011
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po...    28   2.2  
SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    28   3.0  
SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom...    27   5.2  

>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 35.9 bits (79), Expect = 0.011
 Identities = 19/50 (38%), Positives = 19/50 (38%)
 Frame = +1

Query: 16  FXXFFFFFFFFXXXXFFFXXXFCXXXXXFFXXFXXFFXXXFFFXFFXFXF 165
           F  FFFFFFFF     F    F          F  FF     F FF F F
Sbjct: 75  FYWFFFFFFFFSHCRRFHIAIFIHPYDSNVVPFFCFFFYFSLFSFFSFLF 124



 Score = 30.7 bits (66), Expect = 0.42
 Identities = 24/73 (32%), Positives = 27/73 (36%), Gaps = 4/73 (5%)
 Frame = +1

Query: 10  FXFXXFFFFFFFFXXXXFFFXXXFCXXXXXFFXXF----XXFFXXXFFFXFFXFXFFXFX 177
           F    FF++FFFF    FFF          F   +      FF   FFF F  F FF F 
Sbjct: 69  FTIEAFFYWFFFF---FFFFSHCRRFHIAIFIHPYDSNVVPFF--CFFFYFSLFSFFSFL 123

Query: 178 XCFCVFXVFXXXC 216
                F  F   C
Sbjct: 124 FTSLHFNFFFRLC 136



 Score = 27.5 bits (58), Expect = 3.9
 Identities = 12/27 (44%), Positives = 12/27 (44%)
 Frame = +1

Query: 4   FFFXFXXFFFFFFFFXXXXFFFXXXFC 84
           FFF F  F FF F F    F F    C
Sbjct: 110 FFFYFSLFSFFSFLFTSLHFNFFFRLC 136


>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 284

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 21/67 (31%), Positives = 24/67 (35%)
 Frame = -1

Query: 295 KKKTXTXKKKXKKNXKKXKXXKXKXXNKXTXKXKXHKNTKXXKKXXXQKXXKKTXXKKXX 116
           K+K  + KKK KK          K   K T K K  K  K   K    K  K     K  
Sbjct: 167 KRKKHSSKKKSKKKTSTGSALDPKKLEKITKKKK--KEHKKKDKESSSKKRKSGSSDKEE 224

Query: 115 KTXQKXK 95
           K  +K K
Sbjct: 225 KKKKKIK 231



 Score = 27.5 bits (58), Expect = 3.9
 Identities = 25/74 (33%), Positives = 32/74 (43%)
 Frame = -2

Query: 225 KXKTXXXKNXKXTKTXXKXKKXKXKKXKKKXXXKKXXKXXKKXXXXXTKXXXKKKXXXXK 46
           K  +   K+ K T T       K +K  KK   KK  K  KK     +K   K+K     
Sbjct: 169 KKHSSKKKSKKKTSTGSALDPKKLEKITKKK--KKEHK--KKDKESSSK---KRKSGSSD 221

Query: 45  KKKKKKKXXKXKKK 4
           K++KKKK  K K K
Sbjct: 222 KEEKKKKKIKLKDK 235



 Score = 26.6 bits (56), Expect = 6.8
 Identities = 16/53 (30%), Positives = 19/53 (35%)
 Frame = -2

Query: 168 KKXKXKKXKKKXXXKKXXKXXKKXXXXXTKXXXKKKXXXXKKKKKKKKXXKXK 10
           K+ K KK   K   KK             +   KKK    KKK K+    K K
Sbjct: 164 KREKRKKHSSKKKSKKKTSTGSALDPKKLEKITKKKKKEHKKKDKESSSKKRK 216


>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 27.9 bits (59), Expect = 3.0
 Identities = 17/50 (34%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
 Frame = +3

Query: 441 FFFLXFFXXFFCGVVXXFXVWXXF--FFVFFXXFVXFXFFFXCXVFFXXF 584
           FFFL FF  F       F +   F  +F  F       FFF C   F  F
Sbjct: 120 FFFLLFFLSFSFSFSFLFFLSQIFIVYFSSFPILHFLFFFFLCVCVFLSF 169


>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 27.1 bits (57), Expect = 5.2
 Identities = 12/15 (80%), Positives = 12/15 (80%)
 Frame = -2

Query: 48  KKKKKKKKXXKXKKK 4
           KKKKKKKK  K KKK
Sbjct: 436 KKKKKKKKNNKKKKK 450



 Score = 26.2 bits (55), Expect = 9.0
 Identities = 11/16 (68%), Positives = 12/16 (75%)
 Frame = -3

Query: 557 KKKXKXNKXXKKNKKK 510
           KKK K NK  KKNK+K
Sbjct: 439 KKKKKNNKKKKKNKRK 454


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 668,499
Number of Sequences: 5004
Number of extensions: 4277
Number of successful extensions: 105
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 645466968
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)