Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_C09
         (707 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315...    33   0.29 
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373...    31   1.2  
07_03_0846 - 21983581-21986055                                         29   2.7  
05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581     29   2.7  
07_03_1086 + 23858419-23859423,23859527-23859610                       29   3.6  
01_06_0695 - 31292622-31293317                                         28   6.3  
12_02_1248 - 27330177-27330740                                         28   8.4  
03_05_0951 + 29093962-29094373,29095291-29095388,29095689-290960...    28   8.4  

>02_04_0232 +
           21130122-21130454,21130895-21131053,21131424-21131582,
           21132420-21132512,21133321-21133437,21133623-21133697,
           21133878-21134104,21134200-21135073
          Length = 678

 Score = 32.7 bits (71), Expect = 0.29
 Identities = 17/43 (39%), Positives = 20/43 (46%)
 Frame = +1

Query: 70  PSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSID 198
           PS TP  ER  S+D   PR     Y   R+RD    K+  S D
Sbjct: 365 PSDTPHLERSQSSDRRRPRSSDPRYTPSRTRDEDAHKQHSSRD 407


>06_03_1055 -
           27234824-27234838,27236087-27236125,27236322-27237388,
           27237422-27237630,27237650-27238053
          Length = 577

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 16/45 (35%), Positives = 27/45 (60%)
 Frame = -1

Query: 338 ASLAESGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 204
           A+ A +GK +   E  E   S+QCD T  + +S RE ++R+P+ +
Sbjct: 430 AAAAAAGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473


>07_03_0846 - 21983581-21986055
          Length = 824

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/50 (38%), Positives = 26/50 (52%)
 Frame = +1

Query: 196 DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 345
           DL+D  G  +R    +C+T    S     PD   S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373


>05_04_0396 - 20934444-20934969,20935042-20935316,20935447-20935581
          Length = 311

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -1

Query: 425 GHLVHALGR-AAGGAKLPSAGLCLNASKAEASLA 327
           G LV  L R   GG    SAG+C   S+ +ASLA
Sbjct: 203 GRLVETLARDGGGGGGAYSAGVCFYGSRMDASLA 236


>07_03_1086 + 23858419-23859423,23859527-23859610
          Length = 362

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 26/86 (30%), Positives = 37/86 (43%), Gaps = 6/86 (6%)
 Frame = -1

Query: 512 PFVRQVSFTLLMACR-CDSNTAQYERNRSFGHLVHALGRAAGGAKLPSAGLCLNA----- 351
           P +++   T L+    CD N A      +   LVHAL  AA  A   +A   L       
Sbjct: 119 PLLQEHGVTALLNLSICDENKAIIVEAGAIRPLVHALKSAASPAARENAACALLRLSQLD 178

Query: 350 SKAEASLAESGKDMLTVEPRESGGSK 273
             A AS+  +G   L V   E+GG++
Sbjct: 179 GSAAASIGRAGAIPLLVSLLETGGAR 204


>01_06_0695 - 31292622-31293317
          Length = 231

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 16/45 (35%), Positives = 18/45 (40%)
 Frame = +1

Query: 22  PGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLR 156
           P     L   Q D   PS++      SST  S P HR  L P  R
Sbjct: 3   PSTKQLLPMPQQDPNSPSSSTSSSSSSSTSPSHPHHRAPLPPSPR 47


>12_02_1248 - 27330177-27330740
          Length = 187

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -2

Query: 127 VGARNSL*TTSVPGGVLCSVEQRRAAIC*DSA-LRQVKKKKKK 2
           + AR    +  VPG + C +E+R  A+  + A +   KKK+KK
Sbjct: 60  IAARPLWVSRDVPGAMECWIEEREKALAEEEADIASGKKKRKK 102


>03_05_0951 +
           29093962-29094373,29095291-29095388,29095689-29096087,
           29096999-29097724,29097802-29097968,29098046-29098311,
           29098396-29098581,29099072-29099346,29099435-29099683
          Length = 925

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = -1

Query: 347 KAEASLAESGKDMLTVEP-RESGGSKQCDFTSRVSHSKRETR-RRSPFGSRRSMLSVFFL 174
           K+ AS A  G D     P R  GG K+    S  + SKR  + R + F     +L    L
Sbjct: 4   KSSASAAHQGGDAPAEAPRRRGGGGKRKSGGSSFTPSKRHAKERNAAFHVPPHLLHSGPL 63

Query: 173 TRASR 159
           TRA+R
Sbjct: 64  TRAAR 68


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,586,651
Number of Sequences: 37544
Number of extensions: 396207
Number of successful extensions: 1187
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1153
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1186
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)