Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_T7_C04
(792 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 33 0.18
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 33 0.23
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 33 0.31
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 33 0.31
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 32 0.41
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 32 0.41
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 32 0.41
Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical pr... 29 2.9
Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical pr... 29 2.9
U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog (hed... 29 3.8
Z82095-2|CAB05027.2| 602|Caenorhabditis elegans Hypothetical pr... 29 5.0
Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical pr... 28 6.7
AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical ... 28 6.7
AC025716-19|AAK39602.2| 549|Caenorhabditis elegans Hypothetical... 28 6.7
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 33.5 bits (73), Expect = 0.18
Identities = 17/56 (30%), Positives = 17/56 (30%)
Frame = +3
Query: 555 PXPNPXPXXXXXXRXPLSXPXXXXXXPXXXXPPPPXXPPXPXPXXXXXXXXPXXXP 722
P P P P PL P P PPP PP P P P P
Sbjct: 27 PPPCPPPPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPPPPMCPPPPPPMP 82
Score = 31.9 bits (69), Expect = 0.54
Identities = 15/51 (29%), Positives = 15/51 (29%)
Frame = +3
Query: 633 PXXXXPPPPXXPPXPXPXXXXXXXXPXXXPXXXXXXXPPXPXXXXXXXPXP 785
P PPPP P P P P P PP P P P
Sbjct: 28 PPCPPPPPPMCAPPPLPCPPPPICPPQFCPPPPMCPPPPPPPPPPMCPPPP 78
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical
protein B0280.13 protein.
Length = 616
Score = 33.1 bits (72), Expect = 0.23
Identities = 14/43 (32%), Positives = 16/43 (37%)
Frame = +3
Query: 555 PXPNPXPXXXXXXRXPLSXPXXXXXXPXXXXPPPPXXPPXPXP 683
P P+P P + P P PPPP PP P P
Sbjct: 481 PNPSPSPQPAEVSKSPPPPPPLPPIATPSSVPPPPPPPPPPPP 523
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/56 (26%), Positives = 15/56 (26%)
Frame = +3
Query: 555 PXPNPXPXXXXXXRXPLSXPXXXXXXPXXXXPPPPXXPPXPXPXXXXXXXXPXXXP 722
P P P R P P PPPP PP P P P
Sbjct: 466 PPTTPKPAPPPPSRIPNPSPSPQPAEVSKSPPPPPPLPPIATPSSVPPPPPPPPPP 521
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 32.7 bits (71), Expect = 0.31
Identities = 15/48 (31%), Positives = 15/48 (31%)
Frame = +3
Query: 648 PPPPXXPPXPXPXXXXXXXXPXXXPXXXXXXXPPXPXXXXXXXPXPXG 791
PPPP P P P P P PP P P P G
Sbjct: 265 PPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPG 312
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/41 (31%), Positives = 13/41 (31%)
Frame = +3
Query: 555 PXPNPXPXXXXXXRXPLSXPXXXXXXPXXXXPPPPXXPPXP 677
P P P P P P PPPP PP P
Sbjct: 334 PPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAP 374
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 32.7 bits (71), Expect = 0.31
Identities = 15/48 (31%), Positives = 15/48 (31%)
Frame = +3
Query: 648 PPPPXXPPXPXPXXXXXXXXPXXXPXXXXXXXPPXPXXXXXXXPXPXG 791
PPPP P P P P P PP P P P G
Sbjct: 275 PPPPSVTPMPPPMPPTPGMTPRPPPPPSSGMWPPPPPPPPGRTPGPPG 322
Score = 27.9 bits (59), Expect = 8.8
Identities = 13/41 (31%), Positives = 13/41 (31%)
Frame = +3
Query: 555 PXPNPXPXXXXXXRXPLSXPXXXXXXPXXXXPPPPXXPPXP 677
P P P P P P PPPP PP P
Sbjct: 344 PPPPPPGMRYPGGMPPPPPPRYPSAGPGMYPPPPPSRPPAP 384
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 32.3 bits (70), Expect = 0.41
Identities = 20/75 (26%), Positives = 20/75 (26%)
Frame = +3
Query: 561 PNPXPXXXXXXRXPLSXPXXXXXXPXXXXPPPPXXPPXPXPXXXXXXXXPXXXPXXXXXX 740
P P P P P P PPPP PP P P P
Sbjct: 713 PPPPPGLPPITGGPPPPPPPGGLPPITGGPPPP-PPPGGLPPISGGPPPPPPPPGGCPPP 771
Query: 741 XPPXPXXXXXXXPXP 785
PP P P P
Sbjct: 772 PPPPPPGGFKGGPPP 786
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 32.3 bits (70), Expect = 0.41
Identities = 20/75 (26%), Positives = 20/75 (26%)
Frame = +3
Query: 561 PNPXPXXXXXXRXPLSXPXXXXXXPXXXXPPPPXXPPXPXPXXXXXXXXPXXXPXXXXXX 740
P P P P P P PPPP PP P P P
Sbjct: 713 PPPPPGLPPITGGPPPPPPPGGLPPITGGPPPP-PPPGGLPPISGGPPPPPPPPGGCPPP 771
Query: 741 XPPXPXXXXXXXPXP 785
PP P P P
Sbjct: 772 PPPPPPGGFKGGPPP 786
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 32.3 bits (70), Expect = 0.41
Identities = 20/75 (26%), Positives = 20/75 (26%)
Frame = +3
Query: 561 PNPXPXXXXXXRXPLSXPXXXXXXPXXXXPPPPXXPPXPXPXXXXXXXXPXXXPXXXXXX 740
P P P P P P PPPP PP P P P
Sbjct: 296 PPPPPGLPPITGGPPPPPPPGGLPPITGGPPPP-PPPGGLPPISGGPPPPPPPPGGCPPP 354
Query: 741 XPPXPXXXXXXXPXP 785
PP P P P
Sbjct: 355 PPPPPPGGFKGGPPP 369
>Z93393-1|CAB07688.1| 497|Caenorhabditis elegans Hypothetical
protein Y48E1B.1 protein.
Length = 497
Score = 29.5 bits (63), Expect = 2.9
Identities = 13/41 (31%), Positives = 14/41 (34%)
Frame = +3
Query: 561 PNPXPXXXXXXRXPLSXPXXXXXXPXXXXPPPPXXPPXPXP 683
P P P P + P P PP P PP P P
Sbjct: 325 PPPPPMKLDPSPQPAATPVEITEIPPIISPPAPPPPPPPPP 365
>Z78013-1|CAB01425.3| 1140|Caenorhabditis elegans Hypothetical
protein F15B9.4 protein.
Length = 1140
Score = 29.5 bits (63), Expect = 2.9
Identities = 17/67 (25%), Positives = 17/67 (25%)
Frame = +3
Query: 555 PXPNPXPXXXXXXRXPLSXPXXXXXXPXXXXPPPPXXPPXPXPXXXXXXXXPXXXPXXXX 734
P P P P P P P PPP P P P P
Sbjct: 488 PPPPPMPSINGHAPNPPPPPPLLGIAPMSTNAPPPPPMPGMAPLSTGAPTPPPPPPVGMA 547
Query: 735 XXXPPXP 755
PP P
Sbjct: 548 NGGPPPP 554
>U41543-12|AAZ91345.1| 401|Caenorhabditis elegans Groundhog
(hedgehog-like family)protein 7 protein.
Length = 401
Score = 29.1 bits (62), Expect = 3.8
Identities = 13/41 (31%), Positives = 13/41 (31%)
Frame = +3
Query: 555 PXPNPXPXXXXXXRXPLSXPXXXXXXPXXXXPPPPXXPPXP 677
P P P P P P PPPP PP P
Sbjct: 112 PPPAPYPQHAVPAPAPYQQQPPPPPPPPHYPPPPPHYPPPP 152
>Z82095-2|CAB05027.2| 602|Caenorhabditis elegans Hypothetical
protein ZK849.4 protein.
Length = 602
Score = 28.7 bits (61), Expect = 5.0
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = +3
Query: 564 NPXPXXXXXXRXPLSXPXXXXXXPXXXXPPPPXXP 668
NP P R P S P P PPPP P
Sbjct: 472 NPTPVIVDGARPPPSPPALPPALPNPNEPPPPPPP 506
>Z83219-3|CAD57687.1| 965|Caenorhabditis elegans Hypothetical
protein C31C9.6 protein.
Length = 965
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/39 (30%), Positives = 14/39 (35%)
Frame = +3
Query: 555 PXPNPXPXXXXXXRXPLSXPXXXXXXPXXXXPPPPXXPP 671
P P+P P + P P PPPP PP
Sbjct: 474 PNPSPSPQPAEVSKSPPPPPPLPPIATPSSVPPPPPPPP 512
>AF043706-2|AAB97604.2| 730|Caenorhabditis elegans Hypothetical
protein ZC123.1 protein.
Length = 730
Score = 28.3 bits (60), Expect = 6.7
Identities = 11/28 (39%), Positives = 12/28 (42%)
Frame = +3
Query: 600 PLSXPXXXXXXPXXXXPPPPXXPPXPXP 683
P + P P PPPP PP P P
Sbjct: 125 PPNPPRTCCPPPTPAAPPPPPPPPPPAP 152
>AC025716-19|AAK39602.2| 549|Caenorhabditis elegans Hypothetical
protein Y39G10AR.17 protein.
Length = 549
Score = 28.3 bits (60), Expect = 6.7
Identities = 12/36 (33%), Positives = 12/36 (33%)
Frame = +3
Query: 648 PPPPXXPPXPXPXXXXXXXXPXXXPXXXXXXXPPXP 755
PPPP PP P P P PP P
Sbjct: 315 PPPPIPPPIQPPPYSYYPVAPAAAPQVYHYAPPPPP 350
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,425,414
Number of Sequences: 27780
Number of extensions: 119531
Number of successful extensions: 786
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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