Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_T7_C02
(862 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0490 + 22672241-22674679 31 0.89
09_04_0081 - 14400293-14400397,14400953-14401036,14401144-144012... 29 4.8
06_03_0696 + 23617687-23617851,23618838-23619536 29 4.8
06_01_0486 - 3455030-3455770 29 4.8
04_04_1125 + 31085106-31085714 29 4.8
03_02_0071 + 5425722-5427154,5427259-5427464,5428445-5428686,542... 29 4.8
06_03_0750 - 24140988-24141037,24141108-24141345,24142158-241422... 29 6.3
12_02_1174 - 26696869-26698191 28 8.3
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 28 8.3
06_02_0119 + 12040476-12041273,12042767-12042834,12042931-12042979 28 8.3
02_01_0458 + 3291563-3291733,3292082-3292769,3292847-3293363,329... 28 8.3
>01_05_0490 + 22672241-22674679
Length = 812
Score = 31.5 bits (68), Expect = 0.89
Identities = 15/34 (44%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Frame = +3
Query: 711 PPXXPPXPHXTXXXXQKPXXP-SXXXPXXPPPXQ 809
PP PP P T +KP P S P PPP Q
Sbjct: 638 PPQPPPPPPPTTRRSRKPPQPPSRPAPPPPPPPQ 671
>09_04_0081 -
14400293-14400397,14400953-14401036,14401144-14401214,
14401293-14401380,14401487-14401678,14401772-14402704
Length = 490
Score = 29.1 bits (62), Expect = 4.8
Identities = 12/34 (35%), Positives = 12/34 (35%)
Frame = +3
Query: 702 PXXPPXXPPXPHXTXXXXQKPXXPSXXXPXXPPP 803
P P PP PH P P P PPP
Sbjct: 133 PRGPGQEPPPPHVPKAAPPPPPPPPPHAPPGPPP 166
Score = 29.1 bits (62), Expect = 4.8
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = +3
Query: 702 PXXPPXXPPXPHXTXXXXQKPXXPSXXXPXXPPP 803
P PP PP PH P P P PPP
Sbjct: 220 PPPPPPPPPSPHR-HPAAHPPPPPHHPAPRPPPP 252
>06_03_0696 + 23617687-23617851,23618838-23619536
Length = 287
Score = 29.1 bits (62), Expect = 4.8
Identities = 15/36 (41%), Positives = 15/36 (41%)
Frame = +3
Query: 702 PXXPPXXPPXPHXTXXXXQKPXXPSXXXPXXPPPXQ 809
P PP PP P T Q P PS PPP Q
Sbjct: 79 PPPPPPPPPSPPATHDVGQPPPPPSL---AAPPPAQ 111
>06_01_0486 - 3455030-3455770
Length = 246
Score = 29.1 bits (62), Expect = 4.8
Identities = 12/34 (35%), Positives = 12/34 (35%)
Frame = +3
Query: 711 PPXXPPXPHXTXXXXQKPXXPSXXXPXXPPPXQP 812
PP PP P P P P PPP P
Sbjct: 77 PPYTPPTPRPPPTPPYVPSPPPYVPPYIPPPTPP 110
>04_04_1125 + 31085106-31085714
Length = 202
Score = 29.1 bits (62), Expect = 4.8
Identities = 13/37 (35%), Positives = 13/37 (35%)
Frame = +3
Query: 702 PXXPPXXPPXPHXTXXXXQKPXXPSXXXPXXPPPXQP 812
P PP PP P T P P P P P P
Sbjct: 39 PPPPPCQPPPPTPTPATPTTPPTPWTPPPATPTPPTP 75
>03_02_0071 +
5425722-5427154,5427259-5427464,5428445-5428686,
5428788-5429570
Length = 887
Score = 29.1 bits (62), Expect = 4.8
Identities = 12/28 (42%), Positives = 12/28 (42%)
Frame = +1
Query: 712 PXXXPPPPTKXXXXXKNPXPPPXXXLXP 795
P PPPP K K P PPP P
Sbjct: 357 PPPPPPPPPKLNTAPKPPPPPPPPPSVP 384
>06_03_0750 -
24140988-24141037,24141108-24141345,24142158-24142232,
24142345-24142413,24142550-24142581,24143503-24143583,
24143791-24143851,24144135-24144275,24144372-24144563
Length = 312
Score = 28.7 bits (61), Expect = 6.3
Identities = 14/48 (29%), Positives = 15/48 (31%)
Frame = +3
Query: 702 PXXPPXXPPXPHXTXXXXQKPXXPSXXXPXXPPPXQPXXXXXXXRSXD 845
P PP P PH + S P PPP P R D
Sbjct: 13 PPPPPAFPADPHLVDRAARFSAFASPSPPSPPPPPPPPPSSSSKRKPD 60
>12_02_1174 - 26696869-26698191
Length = 440
Score = 28.3 bits (60), Expect = 8.3
Identities = 14/39 (35%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Frame = +3
Query: 702 PXXPPXXPPXPHXTXXXX--QKPXXPSXXXPXXPPPXQP 812
P PP PP P KP P P PPP P
Sbjct: 157 PPPPPPPPPRPPSVKPPVVQPKPQPPPSLQPPSPPPPPP 195
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/31 (38%), Positives = 12/31 (38%)
Frame = +3
Query: 711 PPXXPPXPHXTXXXXQKPXXPSXXXPXXPPP 803
PP PP P P PS P PPP
Sbjct: 689 PPPPPPPPLPPANRTNGPGVPSAPPPPPPPP 719
>06_02_0119 + 12040476-12041273,12042767-12042834,12042931-12042979
Length = 304
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/34 (35%), Positives = 12/34 (35%)
Frame = +3
Query: 711 PPXXPPXPHXTXXXXQKPXXPSXXXPXXPPPXQP 812
PP PP P KP P PPP P
Sbjct: 57 PPPPPPQPAKEPPPPTKPKHPKPKQQQHPPPPPP 90
>02_01_0458 +
3291563-3291733,3292082-3292769,3292847-3293363,
3293438-3293637,3294137-3294372,3294469-3295302
Length = 881
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/37 (32%), Positives = 13/37 (35%)
Frame = +3
Query: 702 PXXPPXXPPXPHXTXXXXQKPXXPSXXXPXXPPPXQP 812
P PP PP P + P P PPP P
Sbjct: 354 PPPPPPPPPPPPPPPPPPRPPPPPPPIKKGAPPPAPP 390
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.312 0.143 0.503
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,157,008
Number of Sequences: 37544
Number of extensions: 301122
Number of successful extensions: 1332
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1151
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
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