Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_T7_B23
(738 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 29 0.91
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 23 2.7
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 27 2.8
SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr 2|||M... 27 3.7
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 4.9
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch... 26 4.9
SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit L9|S... 25 8.5
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 25 8.5
SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 25 8.5
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 28.7 bits (61), Expect = 0.91
Identities = 15/71 (21%), Positives = 26/71 (36%)
Frame = +1
Query: 385 PATTQTTILRVPPLLHDVTPTLRKPTANTCQARTSTHFTGKTCIRQRXPNTGASPXTNAP 564
P T+ T + PP+ P ++ TST T T + P T ++ +
Sbjct: 1643 PITSSTALNTSPPITSSTVVNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSTALNTST 1702
Query: 565 EVLXLXVTXNS 597
+ V +S
Sbjct: 1703 PITSSSVLNSS 1713
Score = 25.4 bits (53), Expect = 8.5
Identities = 20/68 (29%), Positives = 26/68 (38%), Gaps = 9/68 (13%)
Frame = +1
Query: 370 PQQILPATTQTTILRVP-PLLHDVTPTLRKPT--------ANTCQARTSTHFTGKTCIRQ 522
P L ++ TTI P + + KPT ANT TST T T +
Sbjct: 321 PSVALSTSSTTTITNASTPAANTIISRSSKPTDTTNSISFANTTPENTSTQITSPTAVNS 380
Query: 523 RXPNTGAS 546
P T +S
Sbjct: 381 STPITSSS 388
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 23.0 bits (47), Expect(2) = 2.7
Identities = 15/35 (42%), Positives = 18/35 (51%)
Frame = +3
Query: 177 RGAPISAVRAGGVISSFGGPVGRPPLPSRRSARFS 281
R P + V GG S P+ RPPLPS S+ S
Sbjct: 154 RPLPETPVSPGG---SLVHPLPRPPLPSSVSSHSS 185
Score = 22.2 bits (45), Expect(2) = 2.7
Identities = 9/23 (39%), Positives = 16/23 (69%)
Frame = +3
Query: 375 TNLTSHHANYNFTGSTSLTRRYS 443
++++SH + Y+ T STSL Y+
Sbjct: 178 SSVSSHSSPYSTTSSTSLYSLYN 200
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 27.1 bits (57), Expect = 2.8
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +2
Query: 353 TMQTSYRNKSYQPPRKLQFYGFHLSYTTLLPH*GSQPRTLVKHAQART 496
TM + ++K RKL+ HL + +L+ H QP +HAQ RT
Sbjct: 1356 TMLKTSQSKDSSSLRKLRATCLHLLFASLVAHKFDQP----QHAQTRT 1399
>SPBC2G5.05 |||transketolase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 685
Score = 26.6 bits (56), Expect = 3.7
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +2
Query: 233 TRRPASVTVEAICPVLADWVGRDRGSLTSGYLCR 334
TR+ + + ++A+CPVL + VG LT L R
Sbjct: 362 TRKLSEIVLDALCPVLPELVG-GSADLTPSNLTR 394
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.2 bits (55), Expect = 4.9
Identities = 19/88 (21%), Positives = 43/88 (48%), Gaps = 1/88 (1%)
Frame = +3
Query: 258 SRRSARFSRTGWAATAEVSRPATCADSQDILPPCKLLTATNLTSHHANYNFTGSTS-LTR 434
S+ S+ FS T ++++ S T + S P +++L+SH ++ + S++ ++
Sbjct: 362 SKSSSSFSSTVSSSSSTSSSTLTSSSSSSSRPASSSSHSSSLSSHKSSSSSKSSSAPVSS 421
Query: 435 RYSHTEEANREHLSSTHKHALHRKNLHP 518
+ H ++R S + H+L + P
Sbjct: 422 AFYHNSTSSRSS-SHSSSHSLSSLSSKP 448
>SPBC428.08c |clr4||histone H3 methyltransferase
Clr4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 490
Score = 26.2 bits (55), Expect = 4.9
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +2
Query: 455 SQPRTLVKHA-QARTSPEKPASXSGXRTPAHRQXRTHRKFYXXR 583
SQ R LV ++ + TSP+ + + R P+ TH FY R
Sbjct: 163 SQKRELVSNSIKEATSPKTSSILTKPRNPSKLDSYTHLSFYEKR 206
>SPAC644.17c |mrpl9||mitochondrial ribosomal protein subunit
L9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 25.4 bits (53), Expect = 8.5
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = +1
Query: 340 KTFYHHANFLPQQIL 384
+TF HHAN P++IL
Sbjct: 13 RTFAHHANLTPRKIL 27
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 25.4 bits (53), Expect = 8.5
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Frame = +1
Query: 355 HANFLPQQILPATTQTTILRVPPLLHDVTPTLRKPT--ANT 471
H N + P T T VPP H T T+ PT ANT
Sbjct: 114 HVNSTTTVVPPTTHVNTTTVVPPTTHVNTTTVVPPTTHANT 154
>SPBP4H10.14c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 308
Score = 25.4 bits (53), Expect = 8.5
Identities = 9/29 (31%), Positives = 18/29 (62%)
Frame = +3
Query: 375 TNLTSHHANYNFTGSTSLTRRYSHTEEAN 461
++ S H N N +++R+YS+T++ N
Sbjct: 83 SSFLSDHNNNNLFSDDTISRQYSNTDDIN 111
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,733,399
Number of Sequences: 5004
Number of extensions: 52052
Number of successful extensions: 180
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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