Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_B22
         (746 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    27   2.8  
SPBC800.09 |sum2||G2/M transition checkpoint protein Sum2|Schizo...    27   3.8  
SPCC622.14 |||GTPase activating protein |Schizosaccharomyces pom...    26   5.0  
SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces ...    23   8.2  
SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|c...    25   8.7  
SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po...    25   8.7  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   8.7  
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    25   8.7  
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos...    25   8.7  

>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = +1

Query: 289 RIEGSETSAVSVRQPVGPPRRCRWCPGIPRWTRTSLPGRDA 411
           R   +E S  S   PVGPP    W P     T+TSL  + A
Sbjct: 128 RFNNAENSGHSNYYPVGPP---EWAPYTRLMTQTSLYAKSA 165


>SPBC800.09 |sum2||G2/M transition checkpoint protein
           Sum2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = -2

Query: 604 PXRTYPSPPSQGPQKGFCPTSAPVRGELPPVKVKGRPE 491
           P   YP+ P+Q    G  P   P+    P V   G P+
Sbjct: 136 PYYMYPNAPAQFVPPGGLPLGTPLDASTPAVPYYGAPD 173


>SPCC622.14 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -3

Query: 423 STVYRVPTRQAGSGPAGYSGTPAAPSGRPDGLPYRDGRRFRAFDS 289
           STV  +P+    +    ++   +  S RPD LP   G R++ F S
Sbjct: 138 STVPTIPSVSKEANDKYFAKLGSINSQRPDDLPPSQGGRYQGFGS 182


>SPAC222.09 |seb1||RNA-binding protein Seb1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 22.6 bits (46), Expect(2) = 8.2
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = -2

Query: 622 REGELIPXRTYPSPPSQGPQKGFCPTSAPVRGELPPVKVKGRP 494
           R G L   R+ PSP S  P++   P+   +   LPP     +P
Sbjct: 340 RLGSLHRSRS-PSPRSGRPRRSPSPSHLSIPSTLPPADGVPKP 381



 Score = 21.0 bits (42), Expect(2) = 8.2
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = -2

Query: 427 PVDGVSRPDPAGW 389
           P DGV +P P G+
Sbjct: 374 PADGVPKPTPDGF 386


>SPAC15F9.02 |seh1||nucleoporin Seh1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 339

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = -2

Query: 589 PSPPSQGPQKGFCPTSAPVR 530
           PSPPS+  Q  FC    P R
Sbjct: 161 PSPPSRNEQPAFCVNWCPSR 180


>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = -2

Query: 643 QKEAAETREGELIPXRTYPSPPSQGP--QKGFCPTSAPVRGELPPV 512
           +K+A E  E  +   ++YPS  +Q P   K F P   P    + P+
Sbjct: 313 EKDALELEEQTMEDEKSYPSSGTQSPFYGKNFLPQITPRLDSVVPL 358


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 16/58 (27%), Positives = 21/58 (36%)
 Frame = -2

Query: 667 TXASAPXSQKEAAETREGELIPXRTYPSPPSQGPQKGFCPTSAPVRGELPPVKVKGRP 494
           T  SAP        +R  E +P  + P+PP   P      +S P     P   V   P
Sbjct: 225 TSTSAPPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNP 282


>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = -2

Query: 646 SQKEAAETREGELIPXRTYPSPPSQGPQK 560
           S    A + E E+ P   YPS PS+  +K
Sbjct: 68  SNTSKASSSEDEIAPKYLYPSSPSKSTKK 96


>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 732

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -3

Query: 390 GSGPAGYSGTPAAPSGRPDGLPYRDGRR 307
           G  P     TP APS    G P+ +G++
Sbjct: 95  GDSPDSLVSTPTAPSANHHGNPFPNGKQ 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,745,237
Number of Sequences: 5004
Number of extensions: 52963
Number of successful extensions: 155
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 355273338
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)