Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_B19
         (733 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0057 + 25253497-25253589,25253722-25253799,25254583-252546...    38   0.011
11_01_0489 + 3776563-3776692,3776995-3777073,3777532-3777840,377...    33   0.23 
03_01_0245 + 1916718-1917443,1917534-1917719                           32   0.41 
04_01_0354 - 4646826-4647314                                           29   3.8  
07_03_1578 + 27872636-27872840,27872928-27873175,27873215-278732...    28   6.6  
03_02_0356 + 7769153-7769285,7769367-7769485,7769821-7770129           28   6.6  
01_01_1125 - 8920590-8924372                                           28   8.8  

>05_06_0057 +
           25253497-25253589,25253722-25253799,25254583-25254621,
           25254724-25255263,25255352-25255450,25255614-25255691,
           25255961-25256146,25256240-25256365
          Length = 412

 Score = 37.5 bits (83), Expect = 0.011
 Identities = 15/31 (48%), Positives = 23/31 (74%)
 Frame = -1

Query: 220 LIMQVLQLSDEQIALLPPEQRASILLLKEQI 128
           L+ QVL +S +QI +LPPEQR  +L L++ +
Sbjct: 380 LVQQVLSMSPDQINMLPPEQRQQVLQLRDML 410


>11_01_0489 +
           3776563-3776692,3776995-3777073,3777532-3777840,
           3778828-3778898,3778975-3779213,3779306-3779383,
           3779734-3780156,3780416-3780661,3780886-3780978,
           3781480-3781527
          Length = 571

 Score = 33.1 bits (72), Expect = 0.23
 Identities = 17/37 (45%), Positives = 25/37 (67%)
 Frame = -1

Query: 256 IPSGASDQEKAALIMQVLQLSDEQIALLPPEQRASIL 146
           +P    D E +AL+ QVLQL+ EQ++ LP EQ+  +L
Sbjct: 523 VPQLTPDVE-SALLQQVLQLTPEQLSSLPVEQQQQLL 558


>03_01_0245 + 1916718-1917443,1917534-1917719
          Length = 303

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = -2

Query: 516 PRRPLTPCPGXSXRTCGVCRRSPR 445
           PR P TPC   + R CGV  R+PR
Sbjct: 94  PRTPKTPCTPTARRLCGVRSRTPR 117


>04_01_0354 - 4646826-4647314
          Length = 162

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 15/38 (39%), Positives = 17/38 (44%)
 Frame = -2

Query: 555 PWMXIFAGGELPVPRRPLTPCPGXSXRTCGVCRRSPRT 442
           PW   F     P+ R P  P    S  TCG CRR  R+
Sbjct: 21  PWSCSFGFSWPPLQRSP-PPSSSSSSYTCGYCRREFRS 57


>07_03_1578 +
           27872636-27872840,27872928-27873175,27873215-27873295,
           27873665-27873822,27874391-27874450,27874655-27874873,
           27875100-27875201,27875352-27875500,27875582-27875734,
           27875839-27876194
          Length = 576

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 162 NAPVYSC*KNKSRRAHSSVRNKNRANRFLCNSCN 61
           N P Y    + S    +S RNK R  R+L N C+
Sbjct: 365 NTPKYGLIFHSSFIGRASTRNKGRIARYLANKCS 398


>03_02_0356 + 7769153-7769285,7769367-7769485,7769821-7770129
          Length = 186

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 14/39 (35%), Positives = 23/39 (58%)
 Frame = +3

Query: 132 CSFSRSILARCSGGNKAICSSDNCSTCIINAAFS*SEAP 248
           CS++ S +A  + G+KAI  +  C  C   AA + ++AP
Sbjct: 93  CSYNLSYMAVTTTGSKAIAVAFLCIACFALAAGAAADAP 131


>01_01_1125 - 8920590-8924372
          Length = 1260

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = +2

Query: 281 SARHTGR-HLLWRFLLVSWIA*THPRIRVVRWSIGQPRISRVTRILGMMHRRRYWVRGDR 457
           S R T R HLL    L+     + PR    R ++  P  S   R+   + RR   VRGD 
Sbjct: 226 SVRPTARTHLLVASALLDS---SRPRDAAARLALAGPATSSARRLWDALLRRACAVRGDA 282

Query: 458 RQTPHVL 478
           R+   VL
Sbjct: 283 RRALEVL 289


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,585,038
Number of Sequences: 37544
Number of extensions: 353739
Number of successful extensions: 1020
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1020
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)