Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_B16
         (858 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   0.25 
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    28   1.5  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    27   3.4  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   3.4  
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    23   4.4  
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    27   4.5  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   4.5  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    27   4.5  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect(2) = 0.25
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 778 PPPPPPPP 801
           PPPPPPPP
Sbjct: 761 PPPPPPPP 768



 Score = 26.6 bits (56), Expect = 4.5
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 778 PPPPPPPP 801
           PPPPPPPP
Sbjct: 775 PPPPPPPP 782



 Score = 26.6 bits (56), Expect = 4.5
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 778 PPPPPPPP 801
           PPPPPPPP
Sbjct: 776 PPPPPPPP 783



 Score = 22.6 bits (46), Expect(2) = 0.25
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 775 SPPPPPP 795
           SPPPPPP
Sbjct: 731 SPPPPPP 737


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = +1

Query: 775 SPPPPPPPP 801
           SPPPPPPPP
Sbjct: 369 SPPPPPPPP 377


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = +1

Query: 775 SPPPPPPPP 801
           +PPPPPPPP
Sbjct: 188 NPPPPPPPP 196



 Score = 26.6 bits (56), Expect = 4.5
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 778 PPPPPPPP 801
           PPPPPPPP
Sbjct: 190 PPPPPPPP 197


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 8/9 (88%), Positives = 9/9 (100%)
 Frame = +1

Query: 775 SPPPPPPPP 801
           +PPPPPPPP
Sbjct: 8   NPPPPPPPP 16


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 23.0 bits (47), Expect(2) = 4.4
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 778 PPPPPPPP 801
           PPPPPP P
Sbjct: 356 PPPPPPMP 363



 Score = 21.8 bits (44), Expect(2) = 4.4
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 775 SPPPPPPP 798
           S PPPPPP
Sbjct: 354 SRPPPPPP 361


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 778 PPPPPPPP 801
           PPPPPPPP
Sbjct: 306 PPPPPPPP 313



 Score = 26.6 bits (56), Expect = 4.5
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 778 PPPPPPPP 801
           PPPPPPPP
Sbjct: 307 PPPPPPPP 314


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 778  PPPPPPPP 801
            PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 778 PPPPPPPP 801
           PPPPPPPP
Sbjct: 945 PPPPPPPP 952



 Score = 26.6 bits (56), Expect = 4.5
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +1

Query: 778 PPPPPPPP 801
           PPPPPPPP
Sbjct: 946 PPPPPPPP 953


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,427,412
Number of Sequences: 5004
Number of extensions: 15528
Number of successful extensions: 261
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 65
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)