Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_B11
         (992 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    29   1.0  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.3  
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   4.1  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   5.4  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    23   6.2  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.1 bits (62), Expect = 1.0
 Identities = 13/32 (40%), Positives = 13/32 (40%)
 Frame = +2

Query: 533 PPPPPXXFXXXGGWGGGGXXXXXXXFPPPPPP 628
           PPPPP       G    G        PPPPPP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSLPPPPPP 342



 Score = 27.9 bits (59), Expect = 2.3
 Identities = 16/46 (34%), Positives = 16/46 (34%)
 Frame = +2

Query: 491 PPXGXXFXXXXGXPPPPPPXXFXXXGGWGGGGXXXXXXXFPPPPPP 628
           PP G         PPPPPP         G           PPPPPP
Sbjct: 325 PPIGNGSSNSSLPPPPPPP----RSNAAGSIPLPPQGRSAPPPPPP 366


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 28.7 bits (61), Expect = 1.3
 Identities = 16/35 (45%), Positives = 16/35 (45%)
 Frame = +2

Query: 524 GXPPPPPPXXFXXXGGWGGGGXXXXXXXFPPPPPP 628
           G PPPPPP       G  G G        PPPPPP
Sbjct: 759 GGPPPPPPPP-----GVAGAGPPP-----PPPPPP 783



 Score = 28.7 bits (61), Expect = 1.3
 Identities = 12/28 (42%), Positives = 12/28 (42%)
 Frame = +2

Query: 488 PPPXGXXFXXXXGXPPPPPPXXFXXXGG 571
           PPP         G PPPPPP      GG
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPPPAVSAGG 789


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 4.1
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +2

Query: 488 PPPXGXXFXXXXGXPPPPPP 547
           PPP    F      PPPPPP
Sbjct: 11  PPPPPPGFEPPSQPPPPPPP 30



 Score = 23.0 bits (47), Expect(2) = 7.7
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +2

Query: 524 GXPPPPPP 547
           G PPPPPP
Sbjct: 7   GNPPPPPP 14



 Score = 21.0 bits (42), Expect(2) = 7.7
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +2

Query: 611 PPPPPP 628
           PPPPPP
Sbjct: 11  PPPPPP 16


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 26.6 bits (56), Expect = 5.4
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = +2

Query: 533 PPPPPXXFXXXGGWGGGG 586
           PPP P  F   GG+GG G
Sbjct: 200 PPPGPGGFGGFGGFGGEG 217


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 23.4 bits (48), Expect(2) = 6.2
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 608 FPPPPPP 628
           FPPPPPP
Sbjct: 944 FPPPPPP 950



 Score = 21.0 bits (42), Expect(2) = 6.2
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +2

Query: 530 PPPPPP 547
           PPPPPP
Sbjct: 907 PPPPPP 912


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,517,885
Number of Sequences: 5004
Number of extensions: 20802
Number of successful extensions: 181
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 513276802
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)