Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_B04
         (828 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0543 + 10427321-10428315,10428440-10429154                       29   4.5  
10_08_0254 + 16236689-16236793,16237760-16237808,16237988-162380...    29   6.0  

>09_02_0543 + 10427321-10428315,10428440-10429154
          Length = 569

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 13/40 (32%), Positives = 15/40 (37%)
 Frame = +3

Query: 558 KPLTXXXXDPXPXXXSPGXTPPXXNXIGPPPXXPLXQXSP 677
           +P       P P     G  PP    + PPP  P  Q SP
Sbjct: 17  RPTPAPQATPPPAIPESGPPPPPAPDMPPPPPTPAPQSSP 56


>10_08_0254 +
           16236689-16236793,16237760-16237808,16237988-16238076,
           16238178-16238234,16238684-16238746,16238828-16238893,
           16239520-16239606,16239691-16239784,16240351-16240673,
           16241022-16241048,16241065-16241145,16241445-16241476,
           16242126-16242266,16242455-16242516,16243170-16243387
          Length = 497

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 13/35 (37%), Positives = 16/35 (45%)
 Frame = +3

Query: 585 PXPXXXSPGXTPPXXNXIGPPPXXPLXQXSPRKXN 689
           P P   S G  PP    + PPP  P+ Q  P + N
Sbjct: 237 PVPRPFSNGAVPPQIQHVRPPP-PPMQQFPPMQMN 270


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,646,255
Number of Sequences: 37544
Number of extensions: 257101
Number of successful extensions: 990
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 968
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)