Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_B04
         (828 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical ...    29   5.4  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    28   7.1  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    28   7.1  

>AF125964-1|AAD14753.1|  471|Caenorhabditis elegans Hypothetical
           protein W03G1.5 protein.
          Length = 471

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 15/38 (39%), Positives = 18/38 (47%)
 Frame = +3

Query: 276 VRSQVLERLEMRLRSGGGGARPAHCXRHXXRPRRPAXR 389
           ++ Q  E +E R RSG  G R  H  RH  R   P  R
Sbjct: 215 LKKQKSEGVEHRGRSGSPGGRRGHGGRHGSRSGSPGGR 252


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 25/100 (25%), Positives = 29/100 (29%)
 Frame = +2

Query: 512 PXXPXXXRXXAPXXRKTPNXXXPRPPPXXXLXXXDXPXXQXDRAPXXRAPXSTLAPQXXP 691
           P  P       P    TP    PRPPP         P       P  R P     P   P
Sbjct: 264 PPPPPSVTPMPPPMPPTPGMT-PRPPPPPSSGMWPPPPPP----PPGRTPGPPGMPGMPP 318

Query: 692 PXXXAXRXXXPLXXLXRXXPPXXXXXYLGRLPPXXXPXXP 811
           P   +      +  +    PP     Y G +PP   P  P
Sbjct: 319 PPPPSRFGPPGMGGMP--PPPPPGMRYPGGMPPPPPPRYP 356


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 28.3 bits (60), Expect = 7.1
 Identities = 25/100 (25%), Positives = 29/100 (29%)
 Frame = +2

Query: 512 PXXPXXXRXXAPXXRKTPNXXXPRPPPXXXLXXXDXPXXQXDRAPXXRAPXSTLAPQXXP 691
           P  P       P    TP    PRPPP         P       P  R P     P   P
Sbjct: 274 PPPPPSVTPMPPPMPPTPGMT-PRPPPPPSSGMWPPPPPP----PPGRTPGPPGMPGMPP 328

Query: 692 PXXXAXRXXXPLXXLXRXXPPXXXXXYLGRLPPXXXPXXP 811
           P   +      +  +    PP     Y G +PP   P  P
Sbjct: 329 PPPPSRFGPPGMGGMP--PPPPPGMRYPGGMPPPPPPRYP 366


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,939,833
Number of Sequences: 27780
Number of extensions: 141473
Number of successful extensions: 393
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 376
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2050970610
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)