Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_B01
         (754 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomy...   116   3e-27
SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomy...    47   3e-06
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy...    42   7e-05
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    27   3.8  
SPAC4G9.02 |||ribonuclease H2 complex subunit|Schizosaccharomyce...    26   6.6  
SPAC644.12 |cdc5||cell division control protein Cdc5|Schizosacch...    25   8.8  

>SPAC1F7.02c |||ATP-dependent RNA helicase Has1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score =  116 bits (280), Expect = 3e-27
 Identities = 63/137 (45%), Positives = 88/137 (64%), Gaps = 2/137 (1%)
 Frame = -3

Query: 605 PDDPXG-IHPIGX-GKNCEGV*ELVDMLGYSYVQKRLGFLRXLKQXRVTLXXFXFSWXKV 432
           PDDP   IH +G   +  +G  + +  L  S     LGFLR LK  +V+L  F F   KV
Sbjct: 414 PDDPRDYIHRVGRTARGTKGTGKSLMFLAPS----ELGFLRYLKTAKVSLNEFEFPANKV 469

Query: 431 XDIQLQLEKLISRNYFLNQSAKEAFKSYLRAYDSHHLKTIFDIDTIDLAKASKSFGFNVP 252
            ++Q QLEKL+S+NY+L QSAK+ ++SYL+AY S+ LK+IFDI+ +DLAK +KSFGF  P
Sbjct: 470 ANVQSQLEKLVSKNYYLQQSAKDGYRSYLQAYASYSLKSIFDINKLDLAKVAKSFGFAHP 529

Query: 251 PAVELKVANKGPPQKRK 201
           P V + +   G   K++
Sbjct: 530 PNVNITIGASGRTDKKE 546


>SPBC21H7.04 |||ATP-dependent RNA helicase Dbp7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 709

 Score = 47.2 bits (107), Expect = 3e-06
 Identities = 27/75 (36%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
 Frame = -3

Query: 422 QLQLEKLISRNYFLNQSAKEAFKSYLRAYDSH--HLKTIFDIDTIDLAKASKSFGFNVPP 249
           QL+LE+ I  N  +   AK AF SY+RAY +H    ++IF++  + L   +KSF     P
Sbjct: 602 QLELERFILENEPMRNIAKRAFTSYVRAYATHLSSERSIFNMRDLHLGHIAKSFALREAP 661

Query: 248 AVELKVANKGPPQKR 204
             ++  AN   P+K+
Sbjct: 662 G-KISGANSSKPRKQ 675


>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 606

 Score = 42.3 bits (95), Expect = 7e-05
 Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
 Frame = -3

Query: 416 QLEKLISRNYFLNQSAKEAFKSYLRAYDSHHLKTIFDIDTIDLAKASKSFG-FNVPPAVE 240
           +L K++S++  L      AF S++RAY  HH   IF I  +DL + + ++   ++P   E
Sbjct: 403 ELRKIVSKDRDLYDKGLRAFVSHVRAYTKHHASFIFRIKDLDLGQLATAYALLHLPKMPE 462

Query: 239 LK 234
           LK
Sbjct: 463 LK 464


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1427

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -3

Query: 383  LNQSAKEAFKSYLRAYDSHHLKTIFDIDTIDLAKASKSFGFNVPPAV 243
            + Q  + AFK       +H +KTI D D + +  + K+  F  P ++
Sbjct: 1363 IQQMLRAAFKHATVLCIAHRIKTIVDYDKVLVLDSGKTVEFGSPKSL 1409


>SPAC4G9.02 |||ribonuclease H2 complex subunit|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 326

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 19/54 (35%), Positives = 24/54 (44%)
 Frame = -3

Query: 374 SAKEAFKSYLRAYDSHHLKTIFDIDTIDLAKASKSFGFNVPPAVELKVANKGPP 213
           SA+E     LR  + ++L       TIDL K     G NV    E+ V   GPP
Sbjct: 135 SARELAAGMLRYRNKYNLNLQAHDTTIDLIKKVYESGINV---TEIYVDTVGPP 185


>SPAC644.12 |cdc5||cell division control protein
           Cdc5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 757

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = -2

Query: 225 QRTSTEKKGRWWLWILQVLKRSIRFQKEDRK 133
           ++T  + K RW+ WI   +K++   ++ED K
Sbjct: 38  RKTPKQCKARWYEWIDPSIKKTEWSREEDEK 68


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,637,366
Number of Sequences: 5004
Number of extensions: 48660
Number of successful extensions: 115
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)