Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_A19
         (754 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8 ...    23   2.3  
DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.              22   5.4  
AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.            21   9.4  

>AF080430-1|AAC28863.2|  208|Apis mellifera ribosomal protein S8
           protein.
          Length = 208

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -3

Query: 326 VIAARNSQYRTMHEGHRQRPPGARRGSAELEGDRFV 219
           ++    + +R  +EGH   P G +RG+   E +  V
Sbjct: 101 IVTIDATPFRQWYEGHYVLPLGRKRGAKLTEAEEEV 136


>DQ288392-1|ABC41342.1|  120|Apis mellifera nanos protein.
          Length = 120

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/19 (47%), Positives = 10/19 (52%), Gaps = 2/19 (10%)
 Frame = -2

Query: 156 YLTSVCGMCGD--HTRASC 106
           Y   +CG CGD  HT   C
Sbjct: 73  YTCPICGACGDIAHTVKYC 91


>AF134816-1|AAD40232.1|   50|Apis mellifera unknown protein.
          Length = 50

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/28 (25%), Positives = 13/28 (46%)
 Frame = +3

Query: 126 HRTCHRPRLSTLSRGNFTIWSKPCGVMP 209
           H+   + R   L++    IW+  C + P
Sbjct: 4   HQLKKKRRKKNLNQNQMMIWALDCSIKP 31


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 148,517
Number of Sequences: 438
Number of extensions: 2613
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)