Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_A17
         (959 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC105925-1|AAI05926.1|  562|Homo sapiens CPEB2 protein protein.        31   4.7  
BC103941-1|AAI03942.1|  568|Homo sapiens CPEB2 protein protein.        31   4.7  
BC103940-1|AAI03941.1|  589|Homo sapiens cytoplasmic polyadenyla...    31   4.7  
AY255519-1|AAP41553.1|  559|Homo sapiens cytoplasmic polyadenyla...    31   4.7  
AY247744-1|AAP37585.1|  589|Homo sapiens cytoplasmic polyadenyla...    31   4.7  

>BC105925-1|AAI05926.1|  562|Homo sapiens CPEB2 protein protein.
          Length = 562

 Score = 31.5 bits (68), Expect = 4.7
 Identities = 19/61 (31%), Positives = 21/61 (34%), Gaps = 2/61 (3%)
 Frame = +2

Query: 425 PXXKKNFFXXXKXGGXPXFFXXFFXXXPXKXXGGXFFFXXXXGGGXGG--XXXXXPPPPP 598
           P  +  F+        P FF  F    P    G         GGG GG       PPPPP
Sbjct: 6   PDSENGFYPGLPSSMNPAFFPSFSPVSPHGCTGLSVPTSGGGGGGFGGPFSATAVPPPPP 65

Query: 599 P 601
           P
Sbjct: 66  P 66



 Score = 31.5 bits (68), Expect = 4.7
 Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 5/33 (15%)
 Frame = -2

Query: 601 GGGGGGXXXXXS-----PPPPPXXXXKKKXPPP 518
           GGGGGG     S     PPPPP     ++ PPP
Sbjct: 45  GGGGGGFGGPFSATAVPPPPPPAMNIPQQQPPP 77


>BC103941-1|AAI03942.1|  568|Homo sapiens CPEB2 protein protein.
          Length = 568

 Score = 31.5 bits (68), Expect = 4.7
 Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 5/33 (15%)
 Frame = -2

Query: 601 GGGGGGXXXXXS-----PPPPPXXXXKKKXPPP 518
           GGGGGG     S     PPPPP     ++ PPP
Sbjct: 46  GGGGGGFGGPFSATAVPPPPPPAMNIPQQQPPP 78


>BC103940-1|AAI03941.1|  589|Homo sapiens cytoplasmic
           polyadenylation element binding protein 2 protein.
          Length = 589

 Score = 31.5 bits (68), Expect = 4.7
 Identities = 19/61 (31%), Positives = 21/61 (34%), Gaps = 2/61 (3%)
 Frame = +2

Query: 425 PXXKKNFFXXXKXGGXPXFFXXFFXXXPXKXXGGXFFFXXXXGGGXGG--XXXXXPPPPP 598
           P  +  F+        P FF  F    P    G         GGG GG       PPPPP
Sbjct: 6   PDSENGFYPGLPSSMNPAFFPSFSPVSPHGCTGLSVPTSGGGGGGFGGPFSATAVPPPPP 65

Query: 599 P 601
           P
Sbjct: 66  P 66



 Score = 31.5 bits (68), Expect = 4.7
 Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 5/33 (15%)
 Frame = -2

Query: 601 GGGGGGXXXXXS-----PPPPPXXXXKKKXPPP 518
           GGGGGG     S     PPPPP     ++ PPP
Sbjct: 45  GGGGGGFGGPFSATAVPPPPPPAMNIPQQQPPP 77


>AY255519-1|AAP41553.1|  559|Homo sapiens cytoplasmic
           polyadenylation element binding protein CPEB2b protein.
          Length = 559

 Score = 31.5 bits (68), Expect = 4.7
 Identities = 19/61 (31%), Positives = 21/61 (34%), Gaps = 2/61 (3%)
 Frame = +2

Query: 425 PXXKKNFFXXXKXGGXPXFFXXFFXXXPXKXXGGXFFFXXXXGGGXGG--XXXXXPPPPP 598
           P  +  F+        P FF  F    P    G         GGG GG       PPPPP
Sbjct: 6   PDSENGFYPGLPSSMNPAFFPSFSPVSPHGCTGLSVPTSGGGGGGFGGPFSATAVPPPPP 65

Query: 599 P 601
           P
Sbjct: 66  P 66



 Score = 31.5 bits (68), Expect = 4.7
 Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 5/33 (15%)
 Frame = -2

Query: 601 GGGGGGXXXXXS-----PPPPPXXXXKKKXPPP 518
           GGGGGG     S     PPPPP     ++ PPP
Sbjct: 45  GGGGGGFGGPFSATAVPPPPPPAMNIPQQQPPP 77


>AY247744-1|AAP37585.1|  589|Homo sapiens cytoplasmic
           polyadenylation element binding protein CPEB2 protein.
          Length = 589

 Score = 31.5 bits (68), Expect = 4.7
 Identities = 19/61 (31%), Positives = 21/61 (34%), Gaps = 2/61 (3%)
 Frame = +2

Query: 425 PXXKKNFFXXXKXGGXPXFFXXFFXXXPXKXXGGXFFFXXXXGGGXGG--XXXXXPPPPP 598
           P  +  F+        P FF  F    P    G         GGG GG       PPPPP
Sbjct: 6   PDSENGFYPGLPSSMNPAFFPSFSPVSPHGCTGLSVPTSGGGGGGFGGPFSATAVPPPPP 65

Query: 599 P 601
           P
Sbjct: 66  P 66



 Score = 31.5 bits (68), Expect = 4.7
 Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 5/33 (15%)
 Frame = -2

Query: 601 GGGGGGXXXXXS-----PPPPPXXXXKKKXPPP 518
           GGGGGG     S     PPPPP     ++ PPP
Sbjct: 45  GGGGGGFGGPFSATAVPPPPPPAMNIPQQQPPP 77


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 81,631,033
Number of Sequences: 237096
Number of extensions: 1765590
Number of successful extensions: 23682
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2910
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9808
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 12714176638
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)