Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_A16
         (751 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb...    26   6.6  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    26   6.6  
SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate reductase/...    26   6.6  
SPBC428.08c |clr4||histone H3 methyltransferase Clr4|Schizosacch...    25   8.7  

>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 224

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 17/60 (28%), Positives = 27/60 (45%)
 Frame = -1

Query: 535 VPPRARXPAVRQQGQLHAAPGFR*RASRL*ELHHLRFEESSRPRYPAAHLHVHGIPSSGS 356
           VPP +    +RQ+G + +      + S      H     S+ P Y A+ L+   + SSGS
Sbjct: 6   VPPPSYEEVLRQEGVIDSPNSSNGQTST--SAGHPSSSSSTLPNYAASSLNSRPVSSSGS 63


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
            subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 200  CFFRMATLDYPRLVQVKHLEILSKS 126
            CFFR+    Y RL ++K+LE ++ S
Sbjct: 1012 CFFRLFHTLYSRLEEIKNLEQMAYS 1036


>SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate
           reductase/acetylglutamate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 885

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 496 LAAGLQXPGHAEVHHVVVHNSLPTYNCVLGEINLELNFN 612
           LA  L    H  ++ +VVH + P  N +L   N+E  ++
Sbjct: 110 LAQSLAFLNHVGLYPIVVHGAGPQLNKILASRNVEPEYS 148


>SPBC428.08c |clr4||histone H3 methyltransferase
           Clr4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 490

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
 Frame = -2

Query: 342 TPQHINNP--NYIFLHYNMQ*NFIHKQSFFSGEKLTKKNNFLIFSTKTIVFFSYGNIRLS 169
           +P H +NP  N    H +     + +   FS E   KK N  +FS++T    S       
Sbjct: 73  SPHHASNPHPNSRQKHQHQTSKSVPRSQRFSRELNVKKENKKVFSSQTTKRQSRKQSTAL 132

Query: 168 TTRSSQALRD 139
           TT  +  + D
Sbjct: 133 TTNDTSIILD 142


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,652,193
Number of Sequences: 5004
Number of extensions: 50178
Number of successful extensions: 118
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)