Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_T7_A14
(1122 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L23982-1|AAA58965.1| 2912|Homo sapiens collagen type VII protein. 33 1.9
L02870-1|AAA75438.1| 2944|Homo sapiens alpha-1 type VII collagen... 33 1.9
AB209645-1|BAD92882.1| 1027|Homo sapiens alpha 1 type VII collag... 33 1.9
BC023532-1|AAH23532.1| 641|Homo sapiens WW domain binding prote... 32 3.3
BC016441-1|AAH16441.2| 400|Homo sapiens WBP11 protein protein. 32 3.3
BC001621-1|AAH01621.1| 641|Homo sapiens WW domain binding prote... 32 3.3
AF118023-1|AAD30425.1| 641|Homo sapiens SH3 domain-binding prot... 32 3.3
AB029309-1|BAA88410.1| 641|Homo sapiens Npw38-binding protein N... 32 3.3
Y00706-1|CAA68698.1| 1212|Homo sapiens protein ( Human mRNA for ... 31 7.7
X05561-1|CAA29075.1| 944|Homo sapiens protein ( Human mRNA for ... 31 7.7
M26576-1|AAA53098.1| 1669|Homo sapiens alpha-1 type IV collagen ... 31 7.7
BC151220-1|AAI51221.1| 1669|Homo sapiens COL4A1 protein protein. 31 7.7
BC142626-1|AAI42627.1| 519|Homo sapiens COL4A1 protein protein. 31 7.7
AL390755-2|CAM20295.1| 1318|Homo sapiens collagen type IV alpha ... 31 7.7
AL390755-1|CAH74130.1| 1669|Homo sapiens collagen type IV alpha ... 31 7.7
AL161773-2|CAM14222.1| 1318|Homo sapiens collagen type IV alpha ... 31 7.7
AL161773-1|CAH71365.1| 1669|Homo sapiens collagen type IV alpha ... 31 7.7
>L23982-1|AAA58965.1| 2912|Homo sapiens collagen type VII protein.
Length = 2912
Score = 33.1 bits (72), Expect = 1.9
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = -2
Query: 239 GIPGEXGPPPRLFQGPRAGLGFGPXPGP 156
G PGE GPP R GP +G PGP
Sbjct: 2175 GEPGETGPPGRGLTGPTGAVGLPGPPGP 2202
>L02870-1|AAA75438.1| 2944|Homo sapiens alpha-1 type VII collagen
protein.
Length = 2944
Score = 33.1 bits (72), Expect = 1.9
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = -2
Query: 239 GIPGEXGPPPRLFQGPRAGLGFGPXPGP 156
G PGE GPP R GP +G PGP
Sbjct: 2207 GEPGETGPPGRGLTGPTGAVGLPGPPGP 2234
>AB209645-1|BAD92882.1| 1027|Homo sapiens alpha 1 type VII collagen
precursor variant protein.
Length = 1027
Score = 33.1 bits (72), Expect = 1.9
Identities = 14/28 (50%), Positives = 15/28 (53%)
Frame = -2
Query: 239 GIPGEXGPPPRLFQGPRAGLGFGPXPGP 156
G PGE GPP R GP +G PGP
Sbjct: 846 GEPGETGPPGRGLTGPTGAVGLPGPPGP 873
>BC023532-1|AAH23532.1| 641|Homo sapiens WW domain binding protein
11 protein.
Length = 641
Score = 32.3 bits (70), Expect = 3.3
Identities = 16/29 (55%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -2
Query: 239 GIPGEXGPPPRLF-QGPRAGLGFGPXPGP 156
G+PG GP PRL GP G GP PGP
Sbjct: 446 GMPGLRGPLPRLLPPGPPPGRPPGPPPGP 474
>BC016441-1|AAH16441.2| 400|Homo sapiens WBP11 protein protein.
Length = 400
Score = 32.3 bits (70), Expect = 3.3
Identities = 16/29 (55%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -2
Query: 239 GIPGEXGPPPRLF-QGPRAGLGFGPXPGP 156
G+PG GP PRL GP G GP PGP
Sbjct: 205 GMPGLRGPLPRLLPPGPPPGRPPGPPPGP 233
>BC001621-1|AAH01621.1| 641|Homo sapiens WW domain binding protein
11 protein.
Length = 641
Score = 32.3 bits (70), Expect = 3.3
Identities = 16/29 (55%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -2
Query: 239 GIPGEXGPPPRLF-QGPRAGLGFGPXPGP 156
G+PG GP PRL GP G GP PGP
Sbjct: 446 GMPGLRGPLPRLLPPGPPPGRPPGPPPGP 474
>AF118023-1|AAD30425.1| 641|Homo sapiens SH3 domain-binding protein
SNP70 protein.
Length = 641
Score = 32.3 bits (70), Expect = 3.3
Identities = 16/29 (55%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -2
Query: 239 GIPGEXGPPPRLF-QGPRAGLGFGPXPGP 156
G+PG GP PRL GP G GP PGP
Sbjct: 446 GMPGLRGPLPRLLPPGPPPGRPPGPPPGP 474
>AB029309-1|BAA88410.1| 641|Homo sapiens Npw38-binding protein
NpwBP protein.
Length = 641
Score = 32.3 bits (70), Expect = 3.3
Identities = 16/29 (55%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
Frame = -2
Query: 239 GIPGEXGPPPRLF-QGPRAGLGFGPXPGP 156
G+PG GP PRL GP G GP PGP
Sbjct: 446 GMPGLRGPLPRLLPPGPPPGRPPGPPPGP 474
>Y00706-1|CAA68698.1| 1212|Homo sapiens protein ( Human mRNA for
alpha1 chain of basement membrane (type IV) collagen.in
neoplastic tissue). ).
Length = 1212
Score = 31.1 bits (67), Expect = 7.7
Identities = 19/36 (52%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -2
Query: 257 GFQFFLGIPGEXGPP--PRLFQGPRAGLGFGPXPGP 156
G + F GIPG GPP P L QGP GF PGP
Sbjct: 128 GERGFPGIPGTPGPPGLPGL-QGPVGPPGFTGPPGP 162
>X05561-1|CAA29075.1| 944|Homo sapiens protein ( Human mRNA for
alpha-1 chain of collagen IV N-terminus. ).
Length = 944
Score = 31.1 bits (67), Expect = 7.7
Identities = 19/36 (52%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -2
Query: 257 GFQFFLGIPGEXGPP--PRLFQGPRAGLGFGPXPGP 156
G + F GIPG GPP P L QGP GF PGP
Sbjct: 173 GERGFPGIPGTPGPPGLPGL-QGPVGPPGFTGPPGP 207
>M26576-1|AAA53098.1| 1669|Homo sapiens alpha-1 type IV collagen
protein.
Length = 1669
Score = 31.1 bits (67), Expect = 7.7
Identities = 19/36 (52%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -2
Query: 257 GFQFFLGIPGEXGPP--PRLFQGPRAGLGFGPXPGP 156
G + F GIPG GPP P L QGP GF PGP
Sbjct: 173 GERGFPGIPGTPGPPGLPGL-QGPVGPPGFTGPPGP 207
>BC151220-1|AAI51221.1| 1669|Homo sapiens COL4A1 protein protein.
Length = 1669
Score = 31.1 bits (67), Expect = 7.7
Identities = 19/36 (52%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -2
Query: 257 GFQFFLGIPGEXGPP--PRLFQGPRAGLGFGPXPGP 156
G + F GIPG GPP P L QGP GF PGP
Sbjct: 173 GERGFPGIPGTPGPPGLPGL-QGPVGPPGFTGPPGP 207
>BC142626-1|AAI42627.1| 519|Homo sapiens COL4A1 protein protein.
Length = 519
Score = 31.1 bits (67), Expect = 7.7
Identities = 19/36 (52%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -2
Query: 257 GFQFFLGIPGEXGPP--PRLFQGPRAGLGFGPXPGP 156
G + F GIPG GPP P L QGP GF PGP
Sbjct: 173 GERGFPGIPGTPGPPGLPGL-QGPVGPPGFTGPPGP 207
>AL390755-2|CAM20295.1| 1318|Homo sapiens collagen type IV alpha 1
protein.
Length = 1318
Score = 31.1 bits (67), Expect = 7.7
Identities = 19/36 (52%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -2
Query: 257 GFQFFLGIPGEXGPP--PRLFQGPRAGLGFGPXPGP 156
G + F GIPG GPP P L QGP GF PGP
Sbjct: 173 GERGFPGIPGTPGPPGLPGL-QGPVGPPGFTGPPGP 207
>AL390755-1|CAH74130.1| 1669|Homo sapiens collagen type IV alpha 1
protein.
Length = 1669
Score = 31.1 bits (67), Expect = 7.7
Identities = 19/36 (52%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -2
Query: 257 GFQFFLGIPGEXGPP--PRLFQGPRAGLGFGPXPGP 156
G + F GIPG GPP P L QGP GF PGP
Sbjct: 173 GERGFPGIPGTPGPPGLPGL-QGPVGPPGFTGPPGP 207
>AL161773-2|CAM14222.1| 1318|Homo sapiens collagen type IV alpha 1
protein.
Length = 1318
Score = 31.1 bits (67), Expect = 7.7
Identities = 19/36 (52%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -2
Query: 257 GFQFFLGIPGEXGPP--PRLFQGPRAGLGFGPXPGP 156
G + F GIPG GPP P L QGP GF PGP
Sbjct: 173 GERGFPGIPGTPGPPGLPGL-QGPVGPPGFTGPPGP 207
>AL161773-1|CAH71365.1| 1669|Homo sapiens collagen type IV alpha 1
protein.
Length = 1669
Score = 31.1 bits (67), Expect = 7.7
Identities = 19/36 (52%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
Frame = -2
Query: 257 GFQFFLGIPGEXGPP--PRLFQGPRAGLGFGPXPGP 156
G + F GIPG GPP P L QGP GF PGP
Sbjct: 173 GERGFPGIPGTPGPPGLPGL-QGPVGPPGFTGPPGP 207
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 78,321,877
Number of Sequences: 237096
Number of extensions: 1297858
Number of successful extensions: 8538
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 4006
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8424
length of database: 76,859,062
effective HSP length: 91
effective length of database: 55,283,326
effective search space used: 15589897932
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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