Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_T7_A08
         (781 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces po...    29   0.75 
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar...    28   1.3  
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar...    26   7.0  

>SPBC8E4.05c |||fumarate lyase superfamily|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 29.1 bits (62), Expect = 0.75
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -3

Query: 320 VLTTRKLAERLGVQQPALYWHFRNKR 243
           ++  +KLAE LG+ QP + WH    R
Sbjct: 209 LMVQQKLAEELGLLQPEIAWHTERDR 234


>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 902

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -2

Query: 153 DRECPQLQAGAARLPPAQWHHVLELQVAAALEYPYEGPKLTRTXAF 16
           D+  P LQ   ++LP  QW  ++ L+   A   P E PK+     F
Sbjct: 699 DQLDPNLQT-LSKLPRTQWQTLINLEAIKARNAPKEVPKVPEKAPF 743


>SPBC28E12.03 |rga4||GTPase activating protein
           Rga4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 933

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 12/49 (24%), Positives = 21/49 (42%)
 Frame = +3

Query: 213 HGFGQCVEQRPLVPEVPVKRRLLNPQPFRQFACRQNRLXPTXXSKRVQG 359
           H F Q   +   +P++P    ++NP P R+ +    +   T  S    G
Sbjct: 296 HAFVQSPTENGTLPQLPKNESVVNPPPLRRSSTMNYKSVSTTTSPSKYG 344


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,315,014
Number of Sequences: 5004
Number of extensions: 20576
Number of successful extensions: 51
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 377352472
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)