Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_T7_A01
(799 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1330 - 32700333-32700770 29 3.2
02_03_0093 - 15120951-15121344,15121658-15121953,15122119-151224... 29 3.2
01_01_0994 - 7861310-7862119,7862378-7862498,7862718-7862901,786... 29 4.3
12_01_0830 - 7678038-7678444,7678996-7680943,7681231-7681983,768... 29 5.7
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 29 5.7
11_02_0059 - 7883980-7884141,7884423-7884467,7884629-7884715,788... 28 7.5
05_07_0104 + 27715123-27715350 28 7.5
10_01_0030 - 386008-388056,388166-388360,388931-389062,389167-38... 28 9.9
09_02_0224 - 5984128-5984923,5985667-5986718,5986800-5987776,598... 28 9.9
>04_04_1330 - 32700333-32700770
Length = 145
Score = 29.5 bits (63), Expect = 3.2
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = +2
Query: 182 RSQSGVRTRSE*GGSRGQHYNQTRGATPRTPDRRVVEAIVDDQR 313
R + G E GG R +H + A+P P+R VV + + +R
Sbjct: 22 RRRGGGSDGEELGGGRDEHEGERERASPVEPEREVVGVVGERER 65
>02_03_0093 -
15120951-15121344,15121658-15121953,15122119-15122419,
15123233-15123628,15123883-15124067
Length = 523
Score = 29.5 bits (63), Expect = 3.2
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +3
Query: 177 TSDLSPGSEPVQSRGVPAVNTTTRHAAPPRGR---PTDGSLRR*STTNDVG 320
TS+ PG PV++ G+ + +T R PPR P+ R S+ D+G
Sbjct: 415 TSESQPGQAPVRTGGMRLMTSTGRDNQPPRSSGVPPSPSEWRSSSSRWDLG 465
>01_01_0994 -
7861310-7862119,7862378-7862498,7862718-7862901,
7862975-7863070,7863428-7863476,7863555-7863596,
7863684-7863836,7865631-7865705,7866462-7866587
Length = 551
Score = 29.1 bits (62), Expect = 4.3
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 265 EDARPTGR*GDSRRPTTSVSAVRRXYQGXPGR 360
EDA+PT GD+ T V+ V G PGR
Sbjct: 445 EDAKPTRSAGDAENLTEDVAKVMEKNAGEPGR 476
>12_01_0830 -
7678038-7678444,7678996-7680943,7681231-7681983,
7682701-7682824,7683590-7683723
Length = 1121
Score = 28.7 bits (61), Expect = 5.7
Identities = 20/50 (40%), Positives = 22/50 (44%)
Frame = +2
Query: 134 RAHPLNDSPGTLTPDVRSQSGVRTRSE*GGSRGQHYNQTRGATPRTPDRR 283
R P TLTP RS S R S G N TRGA+P +RR
Sbjct: 141 RRSPTPPGNKTLTPPRRSPSPASRRMS-ATSSGPTLNGTRGASPVKTNRR 189
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 28.7 bits (61), Expect = 5.7
Identities = 19/69 (27%), Positives = 26/69 (37%)
Frame = +1
Query: 52 PAPRGRAGYVRLNDLQVLRADRGPKVF*GPPTKRLPWHSYTRRPISVRGQNPFRVGGFPR 231
P P G G + +++ D GP++ PP L W P P VGG P
Sbjct: 1007 PPPEGSHGILATTSTELI--DAGPQL---PPLSHLEWKRCPHHPPERPHYLPGEVGGAPS 1061
Query: 232 STLQPDTRR 258
P +R
Sbjct: 1062 PPSPPPPQR 1070
>11_02_0059 -
7883980-7884141,7884423-7884467,7884629-7884715,
7885746-7885874,7885995-7886151,7886248-7886350,
7887050-7887103,7887334-7887451,7888549-7888700,
7890166-7891852
Length = 897
Score = 28.3 bits (60), Expect = 7.5
Identities = 12/28 (42%), Positives = 15/28 (53%)
Frame = +3
Query: 201 EPVQSRGVPAVNTTTRHAAPPRGRPTDG 284
E + +RG T +HA PPRG P G
Sbjct: 119 EKMMTRGRAETETARKHAPPPRGLPLLG 146
>05_07_0104 + 27715123-27715350
Length = 75
Score = 28.3 bits (60), Expect = 7.5
Identities = 11/21 (52%), Positives = 11/21 (52%)
Frame = -3
Query: 308 GRRLSPQRPVGRASSGWRRVS 246
GRRL P P R W RVS
Sbjct: 31 GRRLHPPAPAARGGGAWNRVS 51
>10_01_0030 -
386008-388056,388166-388360,388931-389062,389167-389538,
389753-389894,392274-392533,392737-393015,394796-394939
Length = 1190
Score = 27.9 bits (59), Expect = 9.9
Identities = 22/65 (33%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Frame = +1
Query: 157 PWHSYTR-RPI-SVRGQNPFRVGGFPRSTLQPDTRRHPEDARPTGR*GDSRRPTTSVSAV 330
PW Y R P+ S RVG P P P DAR G S + +VS V
Sbjct: 750 PWLQYRRCYPLDSFIVSKGSRVGSTPNKNAAPKQVWEPMDARKKASLGSSNGSSETVSGV 809
Query: 331 RRXYQ 345
R Q
Sbjct: 810 DRSNQ 814
>09_02_0224 - 5984128-5984923,5985667-5986718,5986800-5987776,
5988427-5989228,5990966-5991016,5992391-5993464,
5994458-5994706
Length = 1666
Score = 27.9 bits (59), Expect = 9.9
Identities = 11/18 (61%), Positives = 12/18 (66%)
Frame = -2
Query: 75 PRAPPRRGDLVGGSAPGP 22
P PP+ G LVGGS P P
Sbjct: 1200 PATPPKGGPLVGGSLPCP 1217
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,147,324
Number of Sequences: 37544
Number of extensions: 399957
Number of successful extensions: 1324
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1308
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2162420256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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