Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_FL5_P18
(863 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0366 - 13102147-13102281,13102560-13102739,13102791-131029... 34 0.17
09_06_0277 - 21983049-21983080,21983250-21984788,21986619-219866... 31 1.6
09_04_0618 + 18988614-18989102,18989913-18990314,18990555-189908... 31 1.6
09_06_0374 + 22649455-22650024,22650085-22650637,22650812-226511... 30 2.7
12_01_0524 - 4167867-4168445 29 3.6
07_03_1747 + 29188568-29188715,29188793-29189541 29 3.6
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 29 3.6
11_06_0411 - 23230580-23230795,23231407-23231862,23232142-232321... 29 6.3
08_02_0813 + 21459776-21461128 29 6.3
09_04_0190 - 15443764-15443838,15445360-15445458,15446396-154468... 28 8.4
07_03_1136 + 24218601-24218734,24218769-24219906 28 8.4
04_01_0530 - 6928528-6929500,6929514-6930964 28 8.4
02_01_0296 + 1978565-1981197,1981216-1981639,1982280-1982771,198... 28 8.4
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 28 8.4
>05_03_0366 -
13102147-13102281,13102560-13102739,13102791-13102992,
13104385-13104575
Length = 235
Score = 33.9 bits (74), Expect = 0.17
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = -1
Query: 344 HQPSAAAPLPCVPTQSFVDPIHLKICLYSHGGLGLTNVSMSQM-QGQVDYDFGVGG 180
H P AAA P VP++ P L + S GG GL S S + G + D G+GG
Sbjct: 7 HSPRAAAAAPSVPSR-LPRPFLLSLSSPSRGGSGLVAASASAVAAGGSEGDGGIGG 61
>09_06_0277 -
21983049-21983080,21983250-21984788,21986619-21986655,
21987612-21987665,21987781-21987893,21988272-21988660,
21988783-21988903,21989245-21989342,21989963-21990153
Length = 857
Score = 30.7 bits (66), Expect = 1.6
Identities = 15/30 (50%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Frame = +1
Query: 721 PGPXXGGGGRXPP-GXPXPXXPXGXPXRXA 807
PGP GGGG PP P P G P R A
Sbjct: 740 PGPPGGGGGYLPPVVFPPPYASRGPPGRRA 769
>09_04_0618 +
18988614-18989102,18989913-18990314,18990555-18990806,
18991564-18991941,18992350-18992426,18992700-18992808,
18993424-18993574,18993810-18993903,18997072-18997474,
18997590-18997742,18998115-18998474
Length = 955
Score = 30.7 bits (66), Expect = 1.6
Identities = 22/82 (26%), Positives = 29/82 (35%), Gaps = 1/82 (1%)
Frame = -3
Query: 795 RPPPGXXGPGXPRGXXAPAPXGWXRGXXPEKTSGXLAXGXSPXPRFXVLXPTGPEPVTSH 616
+P PG P P G AP P T G P P F P GP + H
Sbjct: 408 KPHPGGGMPPYPPGGNAPPHHPRQEPAPPHPTGGMPPY---PMPSFRADRPMGPFDMVDH 464
Query: 615 -XPXXNILYXLCQSRNPFRHYC 553
P + + + R P+ + C
Sbjct: 465 RPPPPHSMEHMGADRMPYSYGC 486
>09_06_0374 +
22649455-22650024,22650085-22650637,22650812-22651147,
22651171-22652605,22652939-22653062
Length = 1005
Score = 29.9 bits (64), Expect = 2.7
Identities = 14/32 (43%), Positives = 14/32 (43%)
Frame = -3
Query: 831 PPGXXWFRGXXXRPPPGXXGPGXPRGXXAPAP 736
PPG R R PPG PG P G P P
Sbjct: 424 PPGLARPRKPLGRRPPGPARPGKPLGRRPPGP 455
>12_01_0524 - 4167867-4168445
Length = 192
Score = 29.5 bits (63), Expect = 3.6
Identities = 22/72 (30%), Positives = 32/72 (44%)
Frame = -1
Query: 341 QPSAAAPLPCVPTQSFVDPIHLKICLYSHGGLGLTNVSMSQMQGQVDYDFGVGGGVPIVR 162
QPS+AA P + + + + YSH G + S + G + G GGG P V
Sbjct: 104 QPSSAAVAPLPSSTNLKSAVRSAMGSYSHSGTRRVHFGDSTVLG--EKAAGAGGGEPAV- 160
Query: 161 CEERVDHEGQ*C 126
EE + E + C
Sbjct: 161 VEEVEEEEEKEC 172
>07_03_1747 + 29188568-29188715,29188793-29189541
Length = 298
Score = 29.5 bits (63), Expect = 3.6
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = +1
Query: 397 PPPGTTLSAPVYLIXAPSPG*SAWTLALQFLCS*TIGPTTCRLARSSSVLG 549
PPP TT++ V L P+ S + QF+C+ TTC + S S+ G
Sbjct: 213 PPPTTTMAQHVVL---PTAAASCHQMQDQFVCARAAETTTCCWSESESLPG 260
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 29.5 bits (63), Expect = 3.6
Identities = 12/26 (46%), Positives = 12/26 (46%)
Frame = +1
Query: 739 GGGRXPPGXPXPXXPXGXPXRXAPEP 816
GG PPG P P P G P P P
Sbjct: 1196 GGPPTPPGAPAPPMPPGVPGGPPPPP 1221
>11_06_0411 -
23230580-23230795,23231407-23231862,23232142-23232195,
23232251-23232367
Length = 280
Score = 28.7 bits (61), Expect = 6.3
Identities = 16/39 (41%), Positives = 21/39 (53%)
Frame = +2
Query: 242 VRVHRANTGRSSNELDRQTTELERRGVGLQHLAGVLGTL 358
V+ H R S EL+RQ ELER+G L+ G L +
Sbjct: 89 VQRHGEELERQSRELERQREELERQGRELKMKDGKLNRM 127
>08_02_0813 + 21459776-21461128
Length = 450
Score = 28.7 bits (61), Expect = 6.3
Identities = 19/61 (31%), Positives = 28/61 (45%)
Frame = +3
Query: 315 GEWGCSTWLVSSERLWRPDVVLLNAAATTAGDYALRARVSNXGSVSWIKRLDISTPISMQ 494
G++ C WL + R P LL+ TT R V+ W K+ IS P+S++
Sbjct: 238 GDYRCPAWLSTDARRLIPR--LLDPNPTT------RISVAQLVETPWFKKTSISRPVSIE 289
Query: 495 L 497
L
Sbjct: 290 L 290
>09_04_0190 -
15443764-15443838,15445360-15445458,15446396-15446891,
15449436-15449479,15449999-15450104,15450243-15450314,
15450474-15450588,15451182-15451407
Length = 410
Score = 28.3 bits (60), Expect = 8.4
Identities = 11/26 (42%), Positives = 19/26 (73%)
Frame = +2
Query: 248 VHRANTGRSSNELDRQTTELERRGVG 325
V+ A +SS+ L ++TTE++R G+G
Sbjct: 371 VNEAKETKSSSSLPQKTTEMQRSGIG 396
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 28.3 bits (60), Expect = 8.4
Identities = 13/37 (35%), Positives = 16/37 (43%)
Frame = -1
Query: 809 GAXRXGXPXGXXGXGXPGGXRPPPPXXGPGXXXXKKL 699
G G P G G GG RPP P G G +++
Sbjct: 111 GGGGGGPPSLPPGAGGGGGARPPAPGGGGGGGAPRRV 147
>04_01_0530 - 6928528-6929500,6929514-6930964
Length = 807
Score = 28.3 bits (60), Expect = 8.4
Identities = 16/47 (34%), Positives = 27/47 (57%)
Frame = +2
Query: 77 VSPHLCYS*CGRMRKRNITVPHDRLAPRNVRSGLPPRLQNRSQPDPA 217
+SP+LCY+ C RK+ +L+ + SGLPP++ S+ + A
Sbjct: 475 LSPNLCYAFCITSRKKT------QLSQPSNNSGLPPKIFTYSELEKA 515
>02_01_0296 +
1978565-1981197,1981216-1981639,1982280-1982771,
1982950-1983087
Length = 1228
Score = 28.3 bits (60), Expect = 8.4
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -3
Query: 426 GRGERSPRRWLQPRLAVPRQASTSVPRTP 340
GRG RS R L+P LA+ A + +P P
Sbjct: 442 GRGPRSTLRILRPGLAISEMARSMLPAEP 470
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 28.3 bits (60), Expect = 8.4
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -3
Query: 423 RGERSPRRWLQPRLAVPRQASTSVPRTPAKCCSPTPLRSNS 301
R RSPRR P R + + R+PA S +P+R++S
Sbjct: 224 RDSRSPRRSASPPNGRNRSPTPNASRSPAPRDSRSPMRADS 264
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,313,599
Number of Sequences: 37544
Number of extensions: 633712
Number of successful extensions: 2064
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1796
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2037
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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