Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_FL5_P17
         (857 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical ...    31   1.1  
U50191-2|AAK31556.2|  335|Caenorhabditis elegans Dumpy : shorter...    29   4.2  
U50191-1|AAO38600.2|  372|Caenorhabditis elegans Dumpy : shorter...    29   4.2  
U41557-6|AAA83307.1|  589|Caenorhabditis elegans Collagen sequen...    29   4.2  
L12692-1|AAA17395.2|  356|Caenorhabditis elegans collagen protein.     29   4.2  

>AL033536-4|CAA22144.2| 1582|Caenorhabditis elegans Hypothetical
            protein Y53C10A.10 protein.
          Length = 1582

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 16/34 (47%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
 Frame = +2

Query: 38   SPPGLGPTW-GRNGPXPXGXLTPKWLNXFGPSGP 136
            SP G  P W   NGP P G   P   N  GP+GP
Sbjct: 1028 SPNGPTPNWPSPNGPSPNGPNGPSDPNKPGPNGP 1061


>U50191-2|AAK31556.2|  335|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 10, isoform a protein.
          Length = 335

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 19/46 (41%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
 Frame = +2

Query: 11  GALGENXXXSPPGL--GP-TWGRNGPXPXGXLTPKWLNXFGPSGPL 139
           GA GE     PPG   GP   G  GP P G L        GP GP+
Sbjct: 188 GAPGETGPTGPPGYRGGPGAPGDKGPTPEGDLKEGPPGDEGPPGPI 233


>U50191-1|AAO38600.2|  372|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 10, isoform b protein.
          Length = 372

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 19/46 (41%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
 Frame = +2

Query: 11  GALGENXXXSPPGL--GP-TWGRNGPXPXGXLTPKWLNXFGPSGPL 139
           GA GE     PPG   GP   G  GP P G L        GP GP+
Sbjct: 225 GAPGETGPTGPPGYRGGPGAPGDKGPTPEGDLKEGPPGDEGPPGPI 270


>U41557-6|AAA83307.1|  589|Caenorhabditis elegans Collagen sequence
           x-hybridizingprotein 1 protein.
          Length = 589

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 17/40 (42%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
 Frame = -3

Query: 135 GPLGPXKFNHLGVKXPXGX-GPFRPQVGPKPGGLXXXFSP 19
           GP GP  FN  G     G  GPF P   P  GG    F+P
Sbjct: 405 GPPGP--FNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNP 442



 Score = 29.1 bits (62), Expect = 4.2
 Identities = 17/40 (42%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
 Frame = -3

Query: 135 GPLGPXKFNHLGVKXPXGX-GPFRPQVGPKPGGLXXXFSP 19
           GP GP  FN  G     G  GPF P   P  GG    F+P
Sbjct: 420 GPPGP--FNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNP 457



 Score = 29.1 bits (62), Expect = 4.2
 Identities = 17/40 (42%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
 Frame = -3

Query: 135 GPLGPXKFNHLGVKXPXGX-GPFRPQVGPKPGGLXXXFSP 19
           GP GP  FN  G     G  GPF P   P  GG    F+P
Sbjct: 435 GPPGP--FNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFNP 472



 Score = 28.7 bits (61), Expect = 5.6
 Identities = 17/40 (42%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
 Frame = -3

Query: 135 GPLGPXKFNHLGVKXPXGX-GPFRPQVGPKPGGLXXXFSP 19
           GP GP  FN  G     G  GPF P   P  GG    F P
Sbjct: 450 GPPGP--FNPSGAPPSGGPPGPFNPSGAPPSGGPPGPFDP 487



 Score = 27.9 bits (59), Expect = 9.8
 Identities = 17/40 (42%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
 Frame = -3

Query: 135 GPLGPXKFNHLGVKXPXGX-GPFRPQVGPKPGGLXXXFSP 19
           GP GP  FN  G     G  GPF P   P  GG    F P
Sbjct: 255 GPPGP--FNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDP 292



 Score = 27.9 bits (59), Expect = 9.8
 Identities = 17/40 (42%), Positives = 17/40 (42%), Gaps = 1/40 (2%)
 Frame = -3

Query: 135 GPLGPXKFNHLGVKXPXGX-GPFRPQVGPKPGGLXXXFSP 19
           GP GP  FN  G     G  GPF P   P  GG    F P
Sbjct: 345 GPPGP--FNPSGAPPSGGPPGPFDPSGAPPSGGPPGPFDP 382


>L12692-1|AAA17395.2|  356|Caenorhabditis elegans collagen protein.
          Length = 356

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 19/46 (41%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
 Frame = +2

Query: 11  GALGENXXXSPPGL--GP-TWGRNGPXPXGXLTPKWLNXFGPSGPL 139
           GA GE     PPG   GP   G  GP P G L        GP GP+
Sbjct: 209 GAPGETGPTGPPGYRGGPGAPGDKGPTPEGDLKEGPPGDEGPPGPI 254


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,324,250
Number of Sequences: 27780
Number of extensions: 187059
Number of successful extensions: 788
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 329
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)