Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_FL5_P02
         (979 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78417-4|CAB01685.2|  531|Caenorhabditis elegans Hypothetical pr...    31   1.2  
AC024783-1|AAY86294.1|  404|Caenorhabditis elegans Hypothetical ...    30   2.2  
U39855-1|AAA81080.3|  615|Caenorhabditis elegans Hypothetical pr...    30   2.9  
AL110479-15|CAB54361.2|  400|Caenorhabditis elegans Hypothetical...    29   5.0  
Z50029-2|CAA90341.3|  537|Caenorhabditis elegans Hypothetical pr...    29   6.7  
AF016670-1|AAB66108.2|  512|Caenorhabditis elegans Hypothetical ...    29   6.7  
AC024207-2|AAL77193.1|  425|Caenorhabditis elegans Hypothetical ...    29   6.7  
AC024207-1|AAL77194.1|  428|Caenorhabditis elegans Hypothetical ...    29   6.7  

>Z78417-4|CAB01685.2|  531|Caenorhabditis elegans Hypothetical
           protein C35C5.5 protein.
          Length = 531

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 252 LQMNWIDXRLSWNXREWG 305
           L+M W D +L+WN  +WG
Sbjct: 81  LEMQWYDKKLTWNPTDWG 98


>AC024783-1|AAY86294.1|  404|Caenorhabditis elegans Hypothetical
           protein Y45G5AL.2 protein.
          Length = 404

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 204 MLTFVSPSPPLRILADLQMNWIDXRLSWNXREWG 305
           ++  V P      L D + +W D RLSW+  ++G
Sbjct: 93  LVEVVEPEEKATFLFDYRADWYDTRLSWDPEDYG 126


>U39855-1|AAA81080.3|  615|Caenorhabditis elegans Hypothetical
           protein F18G5.4 protein.
          Length = 615

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = +3

Query: 252 LQMNWIDXRLSWNXREW 302
           L +NW+D RLSWN   W
Sbjct: 165 LNINWMDPRLSWNESLW 181


>AL110479-15|CAB54361.2|  400|Caenorhabditis elegans Hypothetical
           protein Y105C5B.16 protein.
          Length = 400

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = +3

Query: 222 PSPPLRILADLQMNWIDXRLSWNXREW 302
           P   + ++ ++   W D RLSWN   W
Sbjct: 89  PQEKISVVMEIMEYWYDARLSWNASAW 115


>Z50029-2|CAA90341.3|  537|Caenorhabditis elegans Hypothetical
           protein ZC504.2 protein.
          Length = 537

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +3

Query: 252 LQMNWIDXRLSWNXREWG 305
           L+M W D RL W+   WG
Sbjct: 77  LEMQWFDYRLMWDPGRWG 94


>AF016670-1|AAB66108.2|  512|Caenorhabditis elegans Hypothetical
           protein K02F6.7 protein.
          Length = 512

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 16/50 (32%), Positives = 27/50 (54%)
 Frame = -2

Query: 258 FEDLPVSATVDSDSRMLACLKCRVRXTXIXESGGDSRSYVARSESIMRDS 109
           F+DL V   ++ D   LA +KC+ R T + +S       ++R   ++RDS
Sbjct: 249 FQDLQVLVYLEEDHFYLAHVKCKTRKTGLTDS---YFFQISRGTELVRDS 295


>AC024207-2|AAL77193.1|  425|Caenorhabditis elegans Hypothetical
           protein Y74E4A.1a protein.
          Length = 425

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 252 LQMNWIDXRLSWNXREW 302
           L+++W D RL WN  EW
Sbjct: 107 LKLSWKDRRLRWNPEEW 123


>AC024207-1|AAL77194.1|  428|Caenorhabditis elegans Hypothetical
           protein Y74E4A.1b protein.
          Length = 428

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +3

Query: 252 LQMNWIDXRLSWNXREW 302
           L+++W D RL WN  EW
Sbjct: 107 LKLSWKDRRLRWNPEEW 123


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,611,902
Number of Sequences: 27780
Number of extensions: 166357
Number of successful extensions: 406
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2542323834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)