Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_FL5_P02
         (979 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholi...    27   0.20 
EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholi...    27   0.20 
EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholi...    27   0.20 
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    27   0.20 
EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholi...    27   0.20 
EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholi...    27   0.20 
DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholi...    27   0.20 
DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholi...    27   0.20 
DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.              25   1.0  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    25   1.4  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    25   1.4  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    24   2.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    24   2.4  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   5.6  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   5.6  

>EF127805-1|ABL67942.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 6 protein.
          Length = 461

 Score = 27.5 bits (58), Expect = 0.20
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 252 LQMNWIDXRLSWNXREWG 305
           L++ W+D  L WN  E+G
Sbjct: 39  LKLEWVDYNLQWNESEYG 56


>EF127804-1|ABL67941.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 5 protein.
          Length = 461

 Score = 27.5 bits (58), Expect = 0.20
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 252 LQMNWIDXRLSWNXREWG 305
           L++ W+D  L WN  E+G
Sbjct: 39  LKLEWVDYNLQWNESEYG 56


>EF127803-1|ABL67940.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 4 protein.
          Length = 461

 Score = 27.5 bits (58), Expect = 0.20
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 252 LQMNWIDXRLSWNXREWG 305
           L++ W+D  L WN  E+G
Sbjct: 39  LKLEWVDYNLQWNESEYG 56


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 27.5 bits (58), Expect = 0.20
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 252 LQMNWIDXRLSWNXREWG 305
           L++ W+D  L WN  E+G
Sbjct: 39  LKLEWVDYNLQWNESEYG 56


>EF127801-1|ABL67938.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 2 protein.
          Length = 461

 Score = 27.5 bits (58), Expect = 0.20
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 252 LQMNWIDXRLSWNXREWG 305
           L++ W+D  L WN  E+G
Sbjct: 39  LKLEWVDYNLQWNESEYG 56


>EF127800-1|ABL67937.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 1 protein.
          Length = 461

 Score = 27.5 bits (58), Expect = 0.20
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 252 LQMNWIDXRLSWNXREWG 305
           L++ W+D  L WN  E+G
Sbjct: 39  LKLEWVDYNLQWNESEYG 56


>DQ026036-1|AAY87895.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 27.5 bits (58), Expect = 0.20
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 252 LQMNWIDXRLSWNXREWG 305
           L++ W+D  L WN  E+G
Sbjct: 107 LKLEWVDYNLQWNESEYG 124


>DQ026035-1|AAY87894.1|  529|Apis mellifera nicotinic acetylcholine
           receptor alpha6subunit protein.
          Length = 529

 Score = 27.5 bits (58), Expect = 0.20
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 252 LQMNWIDXRLSWNXREWG 305
           L++ W+D  L WN  E+G
Sbjct: 107 LKLEWVDYNLQWNESEYG 124


>DQ435327-1|ABD92642.1|  145|Apis mellifera OBP10 protein.
          Length = 145

 Score = 25.0 bits (52), Expect = 1.0
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +2

Query: 38  YIILLPFLLTCAIAS-AAECENATSLSLMIDSLLAT 142
           Y ILL  L+TC I S +  C   T  S + D ++AT
Sbjct: 3   YSILLSLLITCLICSPSVHC--GTRPSFVSDEMIAT 36


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 24.6 bits (51), Expect = 1.4
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = +3

Query: 252 LQMNWIDXRLSWNXREWG 305
           ++ +W D +L W+ +E+G
Sbjct: 77  VEQSWYDYKLKWDPKEYG 94


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 24.6 bits (51), Expect = 1.4
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +3

Query: 252 LQMNWIDXRLSWNXREWG 305
           ++  W D +L WN  E+G
Sbjct: 86  VEQRWNDYKLKWNPEEYG 103


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = +3

Query: 252 LQMNWIDXRLSWNXREWG 305
           ++ +W D +L W  +E+G
Sbjct: 81  VEQSWYDYKLRWEPKEYG 98


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 6/18 (33%), Positives = 12/18 (66%)
 Frame = +3

Query: 252 LQMNWIDXRLSWNXREWG 305
           ++ +W D +L W  +E+G
Sbjct: 81  VEQSWYDYKLRWEPKEYG 98


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.6 bits (46), Expect = 5.6
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = +3

Query: 252 LQMNWIDXRLSWNXREWG 305
           ++  W D +L WN  ++G
Sbjct: 73  VEQEWNDYKLKWNPDDYG 90


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.6 bits (46), Expect = 5.6
 Identities = 6/18 (33%), Positives = 11/18 (61%)
 Frame = +3

Query: 252 LQMNWIDXRLSWNXREWG 305
           L++ W D  + WN  ++G
Sbjct: 76  LKLEWNDVNMRWNVSDYG 93


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,296
Number of Sequences: 438
Number of extensions: 1983
Number of successful extensions: 19
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32290713
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)