Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_FL5_O19
(1112 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 39 0.001
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 35 0.023
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 33 0.095
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 38.7 bits (86), Expect = 0.001
Identities = 19/43 (44%), Positives = 19/43 (44%)
Frame = +1
Query: 631 PPPPPXGGGXXXPXPPXXGGGGGXXXXXXPPPPPPXXGXXWGG 759
PPP P GG P PP G G PPPPPP GG
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAG-----PPPPPPPPPAVSAGG 789
Score = 31.5 bits (68), Expect = 0.22
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -3
Query: 699 PPPPPPXGGXXXXXPPPP 646
PPPPPP G PPPP
Sbjct: 761 PPPPPPPPGVAGAGPPPP 778
Score = 31.1 bits (67), Expect = 0.29
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -3
Query: 699 PPPPPPXGGXXXXXPPPP 646
PPPPPP G PPPP
Sbjct: 762 PPPPPPPGVAGAGPPPPP 779
Score = 29.5 bits (63), Expect = 0.88
Identities = 16/43 (37%), Positives = 16/43 (37%)
Frame = +3
Query: 630 PPPPPXGGGXXXXXXPXXGGGGGXXXXXXXPPPPPXXXXXXGG 758
PPP P GG P G G PPPPP GG
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAG-----PPPPPPPPPAVSAGG 789
Score = 29.1 bits (62), Expect = 1.2
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -1
Query: 698 PPPPPXXGGXGXXXPPP 648
PPPPP G G PPP
Sbjct: 764 PPPPPGVAGAGPPPPPP 780
Score = 28.7 bits (61), Expect = 1.5
Identities = 10/18 (55%), Positives = 10/18 (55%)
Frame = -3
Query: 699 PPPPPPXGGXXXXXPPPP 646
PPPPP G PPPP
Sbjct: 764 PPPPPGVAGAGPPPPPPP 781
Score = 28.3 bits (60), Expect = 2.0
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = -3
Query: 699 PPPPPPXGGXXXXXPPPPXGGGG 631
PPP P GG PPP G G
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAG 774
Score = 28.3 bits (60), Expect = 2.0
Identities = 11/23 (47%), Positives = 11/23 (47%)
Frame = -1
Query: 698 PPPPPXXGGXGXXXPPPXGGGGG 630
PPP P GG PPP G G
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAG 774
Score = 28.3 bits (60), Expect = 2.0
Identities = 16/41 (39%), Positives = 16/41 (39%), Gaps = 3/41 (7%)
Frame = -3
Query: 762 PPPPXXXXXXGGGGGXXXXXXPPPPPP---XGGXXXXXPPP 649
PPPP G G PPPPPP GG P P
Sbjct: 761 PPPPPPPPGVAGAG----PPPPPPPPPAVSAGGSRYYAPAP 797
Score = 28.3 bits (60), Expect = 2.0
Identities = 13/37 (35%), Positives = 13/37 (35%)
Frame = -1
Query: 758 PPXXXPXXGGGGGGXXXXXXPPPPPXXGGXGXXXPPP 648
PP P G G G PPP GG P P
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797
Score = 27.5 bits (58), Expect = 3.6
Identities = 13/34 (38%), Positives = 13/34 (38%), Gaps = 2/34 (5%)
Frame = +1
Query: 631 PPPPPX--GGGXXXPXPPXXGGGGGXXXXXXPPP 726
PPPPP G G P PP G P P
Sbjct: 764 PPPPPGVAGAGPPPPPPPPPAVSAGGSRYYAPAP 797
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 34.7 bits (76), Expect = 0.023
Identities = 17/45 (37%), Positives = 17/45 (37%), Gaps = 4/45 (8%)
Frame = -3
Query: 762 PPPPXXXXXXG----GGGGXXXXXXPPPPPPXGGXXXXXPPPPXG 640
PPPP G G G PPPPPP P PP G
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQG 357
Score = 33.1 bits (72), Expect = 0.072
Identities = 15/35 (42%), Positives = 15/35 (42%)
Frame = +1
Query: 631 PPPPPXGGGXXXPXPPXXGGGGGXXXXXXPPPPPP 735
PPPPP PP G G PPPPPP
Sbjct: 311 PPPPPPPSRRNRGKPPI--GNGSSNSSLPPPPPPP 343
Score = 28.7 bits (61), Expect = 1.5
Identities = 14/42 (33%), Positives = 14/42 (33%), Gaps = 3/42 (7%)
Frame = -3
Query: 762 PPPPXXXXXXGGGG---GXXXXXXPPPPPPXGGXXXXXPPPP 646
PPPP G PPPPPP PPP
Sbjct: 337 PPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378
Score = 27.1 bits (57), Expect = 4.7
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = +3
Query: 630 PPPPPXGGGXXXXXXPXXGGGGGXXXXXXXPPPPP 734
PPPPP P G G PPPPP
Sbjct: 311 PPPPPPPSRRNRGKPPI--GNGSSNSSLPPPPPPP 343
Score = 26.2 bits (55), Expect = 8.2
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = +1
Query: 631 PPPPPXGGGXXXPXPPXXGGGGGXXXXXXPPPPPP 735
PPPP P PP PPPPPP
Sbjct: 340 PPPPRSNAAGSIPLPPQGRSA--------PPPPPP 366
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 32.7 bits (71), Expect = 0.095
Identities = 14/30 (46%), Positives = 14/30 (46%)
Frame = -3
Query: 699 PPPPPPXGGXXXXXPPPPXGGGGXXXXKKK 610
PPPPPP G PPPP G K K
Sbjct: 10 PPPPPPPGFEPPSQPPPPPPPGYVKKRKNK 39
Score = 31.1 bits (67), Expect = 0.29
Identities = 13/31 (41%), Positives = 14/31 (45%)
Frame = -3
Query: 699 PPPPPPXGGXXXXXPPPPXGGGGXXXXKKKK 607
PPPPPP G PPP G +K K
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPPGYVKKRKNK 39
Score = 26.2 bits (55), Expect = 8.2
Identities = 12/31 (38%), Positives = 13/31 (41%)
Frame = -1
Query: 698 PPPPPXXGGXGXXXPPPXGGGGGXXXKKKKK 606
PPPPP G PP G K+K K
Sbjct: 9 PPPPPPPPGFEPPSQPPPPPPPGYVKKRKNK 39
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,838,374
Number of Sequences: 5004
Number of extensions: 49604
Number of successful extensions: 309
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 589685872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -