Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_FL5_O08
(1095 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0610 - 25449085-25453284 35 0.099
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 30 2.8
11_06_0016 - 19284810-19284926,19285527-19286879 29 4.9
02_03_0120 + 15463163-15465250 29 4.9
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076 29 6.5
02_01_0458 + 3291563-3291733,3292082-3292769,3292847-3293363,329... 29 8.6
>11_06_0610 - 25449085-25453284
Length = 1399
Score = 35.1 bits (77), Expect = 0.099
Identities = 22/87 (25%), Positives = 28/87 (32%), Gaps = 2/87 (2%)
Frame = -3
Query: 922 HPPSXRXXXPPXXRRPPTXXREXXXXXXPAXXXXXPXXXEXXXXT--TXXNPXGXLXKPA 749
H PS PP + PPT E PA P + + P P
Sbjct: 669 HTPSPPKSTPPTEKSPPTPESESSSPPPPAPEGHMPSPPKSTPPVEKSPPTPESEASSPP 728
Query: 748 XPXXXXXRSSXPXTNPXPXKTRPAXPT 668
P S P ++P K+ P PT
Sbjct: 729 PPAPEGHTPSPPKSSPPEEKSPPIPPT 755
Score = 30.3 bits (65), Expect = 2.8
Identities = 18/81 (22%), Positives = 22/81 (27%)
Frame = -3
Query: 922 HPPSXRXXXPPXXRRPPTXXREXXXXXXPAXXXXXPXXXEXXXXTTXXNPXGXLXKPAXP 743
H PS PP PPT + P P + P P P
Sbjct: 572 HTPSPPKSGPPAGESPPTPESKASPPPTPEEYTPSPPKSTPPAEKSPPTPESKASSPPPP 631
Query: 742 XXXXXRSSXPXTNPXPXKTRP 680
S P + P K+ P
Sbjct: 632 APEGHTPSPPESTPPSEKSPP 652
Score = 30.3 bits (65), Expect = 2.8
Identities = 19/81 (23%), Positives = 25/81 (30%)
Frame = -3
Query: 922 HPPSXRXXXPPXXRRPPTXXREXXXXXXPAXXXXXPXXXEXXXXTTXXNPXGXLXKPAXP 743
H PS PP + PPT E PA P + P + P
Sbjct: 702 HMPSPPKSTPPVEKSPPTPESEASSPPPPAPEGHTPSPPKSSPPEEKSPPIPPTSHTSPP 761
Query: 742 XXXXXRSSXPXTNPXPXKTRP 680
S P ++P K+ P
Sbjct: 762 TPEEYTPSPPKSSPPEEKSPP 782
Score = 29.9 bits (64), Expect = 3.7
Identities = 20/84 (23%), Positives = 25/84 (29%), Gaps = 1/84 (1%)
Frame = -1
Query: 945 PXXPPXXPTPXPXDXXPPPXXGAPL-LXXXXXXPXXXPRXXXXXRLXXKXXTGRXXPTPX 769
P P TP P + PP P P P T + PTP
Sbjct: 629 PPPAPEGHTPSPPESTPPSEKSPPTPESKASSPPPPTPEGHTPSPPKSTPPTEKSPPTPE 688
Query: 768 AXSXNQPXPKXXXHXXPXRRQTXP 697
+ S + P P H + T P
Sbjct: 689 SESSSPPPPAPEGHMPSPPKSTPP 712
Score = 28.7 bits (61), Expect = 8.6
Identities = 19/83 (22%), Positives = 25/83 (30%), Gaps = 2/83 (2%)
Frame = -3
Query: 922 HPPSXRXXXPPXXRRPPTXXREXXXXXXPAXXXXXPXXXEXXXXT--TXXNPXGXLXKPA 749
H PS PP + PPT + P P + T + P P
Sbjct: 636 HTPSPPESTPPSEKSPPTPESKASSPPPPTPEGHTPSPPKSTPPTEKSPPTPESESSSPP 695
Query: 748 XPXXXXXRSSXPXTNPXPXKTRP 680
P S P + P K+ P
Sbjct: 696 PPAPEGHMPSPPKSTPPVEKSPP 718
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 30.3 bits (65), Expect = 2.8
Identities = 26/127 (20%), Positives = 29/127 (22%)
Frame = -1
Query: 975 GXGXAPXXQXPXXPPXXPTPXPXDXXPPPXXGAPLLXXXXXXPXXXPRXXXXXRLXXKXX 796
G P P PP P PP P L P P
Sbjct: 17 GFPPQPPPMNPYGPPPPQQPAYGHMPPPQGAPPPFLAPPPPPPPGPPPPHQPQFNFGPGP 76
Query: 795 TGRXXPTPXAXSXNQPXPKXXXHXXPXRRQTXPX*KPDLXXPPXXXXXXXXXTXPXXRXC 616
+ P P QP P + + P P P T P R
Sbjct: 77 PQQQQPPPPPQMYYQPPPPPPPYGVNSSQPPPPPPPPPSPPPSAPPPPPPPPTQPPPREA 136
Query: 615 XXXXPPP 595
PPP
Sbjct: 137 QLAPPPP 143
>11_06_0016 - 19284810-19284926,19285527-19286879
Length = 489
Score = 29.5 bits (63), Expect = 4.9
Identities = 13/34 (38%), Positives = 14/34 (41%)
Frame = -1
Query: 978 AGXGXAPXXQXPXXPPXXPTPXPXDXXPPPXXGA 877
AG G AP + P PP P P P P A
Sbjct: 73 AGDGAAPDQEPPPSPPPPPPPPPPPRPAPSLASA 106
>02_03_0120 + 15463163-15465250
Length = 695
Score = 29.5 bits (63), Expect = 4.9
Identities = 11/27 (40%), Positives = 12/27 (44%)
Frame = -1
Query: 969 GXAPXXQXPXXPPXXPTPXPXDXXPPP 889
G P P PP P+P P PPP
Sbjct: 291 GPMPPNNQPLPPPPSPSPSPPPPSPPP 317
>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
Length = 906
Score = 29.1 bits (62), Expect = 6.5
Identities = 14/38 (36%), Positives = 14/38 (36%)
Frame = -1
Query: 990 SXXXAGXGXAPXXQXPXXPPXXPTPXPXDXXPPPXXGA 877
S AG G P P P P P PPP GA
Sbjct: 339 SPSAAGAGSGPPPPPPPAAPAAPRPPGPGPGPPPPPGA 376
>02_01_0458 +
3291563-3291733,3292082-3292769,3292847-3293363,
3293438-3293637,3294137-3294372,3294469-3295302
Length = 881
Score = 28.7 bits (61), Expect = 8.6
Identities = 12/29 (41%), Positives = 12/29 (41%)
Frame = -1
Query: 960 PXXQXPXXPPXXPTPXPXDXXPPPXXGAP 874
P P PP P P P PP GAP
Sbjct: 357 PPPPPPPPPPPPPPPRPPPPPPPIKKGAP 385
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,251,058
Number of Sequences: 37544
Number of extensions: 135229
Number of successful extensions: 1028
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 882
length of database: 14,793,348
effective HSP length: 83
effective length of database: 11,677,196
effective search space used: 3281292076
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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