Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_FL5_O03
         (908 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   291   1e-79
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   290   2e-79
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s...    29   1.2  
SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyce...    27   2.8  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    27   3.7  
SPBP35G2.11c |||transcription related zf-ZZ type zinc finger pro...    27   4.9  
SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz...    26   6.4  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    26   6.4  
SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|ch...    26   8.5  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  291 bits (713), Expect = 1e-79
 Identities = 136/242 (56%), Positives = 178/242 (73%), Gaps = 2/242 (0%)
 Frame = +3

Query: 90  FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 269
           F+ P HGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ DRPGS
Sbjct: 6   FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGS 65

Query: 270 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 449
           K++K+EI+EAVTIIETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYKNW+  
Sbjct: 66  KMHKREILEAVTIIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFKS 125

Query: 450 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQL 629
                      + +    +SI ++ +++ +YCSVVRV+AHTQ++     QKKAH+MEIQ+
Sbjct: 126 KKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLMEIQV 183

Query: 630 NGGTIEDKVKWAXEHLEKPILSILCLPR*ND*L--XWCXQGQGYKGVPSRWXXKKLPRXP 803
           NGG++ DKV+WA EH EK +  I      N+ +      +G+G +G  +RW  K+LPR  
Sbjct: 184 NGGSVADKVEWAREHFEKTV-DIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKT 242

Query: 804 XR 809
            R
Sbjct: 243 HR 244


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  290 bits (712), Expect = 2e-79
 Identities = 135/242 (55%), Positives = 178/242 (73%), Gaps = 2/242 (0%)
 Frame = +3

Query: 90  FQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDPSKPVHLTAFIGYKAGMTHVVREPDRPGS 269
           F+ P HGS+GF P+KR+ R RGKVKAFPKDD SKPVHLTAF+GYKAGMTH+VR+ DRPGS
Sbjct: 6   FEQPRHGSLGFLPRKRASRQRGKVKAFPKDDASKPVHLTAFLGYKAGMTHIVRDLDRPGS 65

Query: 270 KINKKEIVEAVTIIETPPMVCVGVVGYIETPHGLRALLTVWAEHMSEDCRRRFYKNWYXX 449
           K++K+EI+EAVT+IETPPMV VGVVGY+ETP GLR+L TVWAEH+SE+ +RRFYKNW+  
Sbjct: 66  KMHKREILEAVTVIETPPMVVVGVVGYVETPRGLRSLTTVWAEHLSEEVKRRFYKNWFKS 125

Query: 450 XXXXXXXXXXXWQDELGRKSIEKDFKKMIRYCSVVRVIAHTQMKLLKQRQKKAHIMEIQL 629
                      + +    +SI ++ +++ +YCSVVRV+AHTQ++     QKKAH+MEIQ+
Sbjct: 126 KKKAFTKYAKKYAE--STQSINRELERIKKYCSVVRVLAHTQIRKTPLAQKKAHLMEIQV 183

Query: 630 NGGTIEDKVKWAXEHLEKPILSILCLPR*ND*L--XWCXQGQGYKGVPSRWXXKKLPRXP 803
           NGG++ DKV+WA EH EK +  I      N+ +      +G+G +G  +RW  K+LPR  
Sbjct: 184 NGGSVADKVEWAREHFEKTV-DIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKT 242

Query: 804 XR 809
            R
Sbjct: 243 HR 244


>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
           subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 378

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 642 IEDKVKWAXEHLEKPILSILCLP 710
           IE  + WA E+++K   S+LCLP
Sbjct: 336 IEQTITWAKEYIKKAKDSLLCLP 358


>SPCC794.03 |||amino acid permease, unknown 13|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 554

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -1

Query: 251 FSNHVGHTGLITDKSSQMNRFARVVFRERLDLTTMTTGPLFGIESH-RPMXGVLKIF 84
           F N VG  G+I D S  +   +R+VF    D     +G L  ++SH +P   V  IF
Sbjct: 344 FMNVVGILGMIFDTSLSIVASSRLVFAVARDGVLPFSGWLRKVDSHGQPTNAVTFIF 400


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 12/42 (28%), Positives = 20/42 (47%), Gaps = 2/42 (4%)
 Frame = +3

Query: 78  RTENFQHPXH--GSMGFYPKKRSRRHRGKVKAFPKDDPSKPV 197
           ++E  QHP     +M FY + +     G    FP++   KP+
Sbjct: 186 KSEQVQHPQAVLDAMAFYSQSKKYLEEGAKPPFPRESTEKPL 227


>SPBP35G2.11c |||transcription related zf-ZZ type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 397

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 17/70 (24%), Positives = 28/70 (40%), Gaps = 1/70 (1%)
 Frame = +3

Query: 69  PACRTENFQHPXHGSMGFYPKKRSRRHRGKVKAFPKDDP-SKPVHLTAFIGYKAGMTHVV 245
           P C      H  + S   +P     +  G  K FP D+P S P+  +   G     T  +
Sbjct: 291 PGCPFYKIWHIRNTSCQSWPSPLYVKFNGGDKLFPGDNPYSFPITSSVHPGEDVNFTVAL 350

Query: 246 REPDRPGSKI 275
           + P++   +I
Sbjct: 351 KVPEKSNKEI 360


>SPBC1683.12 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +3

Query: 543 CSVVRVIAHTQMKLLKQRQKKAHIMEIQLNGGTIEDK 653
           C+VV  +  T M+   QRQ K  I +  LNG  +++K
Sbjct: 433 CTVVGTLTATAMRFYLQRQNK--IKQEILNGERVDEK 467


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = +1

Query: 349 TLRPLMDYALC*LSGRSICLKTVDVASTKTGTNARRRLSLKPVRNGRMSLD 501
           TL    DYA+   S +S+ LK   V+   T T  RRR +    RN  + L+
Sbjct: 219 TLEVDTDYAIIFNSKKSLPLKRNVVSPISTHTKKRRRTANTSQRNDGLDLN 269


>SPBC19C7.06 |||proline-tRNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 716

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 32  VGLLDFLVCDLSSSMSHRKFSAPRSWVYGILSQKEVPS 145
           V  L+ L+ D    + H++ S   +W   + S K+VPS
Sbjct: 7   VSCLEQLITDDLKLVEHQEVSNGATWASALQSTKDVPS 44


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,542,392
Number of Sequences: 5004
Number of extensions: 73668
Number of successful extensions: 177
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 460503700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)