Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BmNP14_FL5_O01
         (855 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    28   1.5  
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    28   1.9  
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   4.5  
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi...    26   7.8  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 13/28 (46%), Positives = 14/28 (50%)
 Frame = -3

Query: 532 PPRVEPPRSNYTFXGAPFPPRAEVATPP 449
           PP   PPRSN      P PP+   A PP
Sbjct: 337 PPPPPPPRSNAA-GSIPLPPQGRSAPPP 363


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1060

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 266  YGAPVWCHALTRQNVAALRRPQRAIAVRAIRG 361
            YG    C  LT +N++A  R Q   AVR + G
Sbjct: 1011 YGPSFICKLLTHENISASHRQQLQSAVRNVLG 1042


>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 14/60 (23%), Positives = 26/60 (43%)
 Frame = -1

Query: 684 TTMPVRICVSRKVRHPRSRPTQSARTGRTASTVRRPADGSAKRRDHASSTDRREWSLRAR 505
           TT P  +  + +     ++P  +A  G TA+     ADG A+      +  ++ W  R +
Sbjct: 582 TTKPTPVSATEEHAAGTTKPAPAA--GATATAENETADGKAQTATDGEAAPKKSWFKRMK 639


>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
           Usp107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 14/55 (25%), Positives = 21/55 (38%)
 Frame = -3

Query: 409 WRPGEQARRLEGDGAVSSDRPDRDRALRTSQRGDVLAGQGVAPYGRAV*CHRPHH 245
           W       R   + A + DR + +R LRT   G  +  +     G+ V    P H
Sbjct: 476 WIRHRAVARAREEDADALDRKEEERELRTRGEGATVETENYVENGKLVTSEMPQH 530


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,418,427
Number of Sequences: 5004
Number of extensions: 43060
Number of successful extensions: 175
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 164
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 175
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)