Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BmNP14_FL5_N20
(875 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U93572-2|AAC51276.1| 1275|Homo sapiens putative p150 protein. 32 2.4
U93563-1|AAC51261.1| 1275|Homo sapiens putative p150 protein. 31 4.1
U93569-2|AAC51271.1| 1275|Homo sapiens putative p150 protein. 30 9.6
L11373-1|AAA75391.1| 904|Homo sapiens protocadherin 43 protein. 30 9.6
BC026218-1|AAH26218.1| 934|Homo sapiens protocadherin gamma sub... 30 9.6
BC019299-1|AAH19299.1| 934|Homo sapiens protocadherin gamma sub... 30 9.6
AK097143-1|BAC04963.1| 372|Homo sapiens protein ( Homo sapiens ... 30 9.6
AF152524-1|AAD43784.1| 863|Homo sapiens protocadherin gamma C3 ... 30 9.6
AF152337-1|AAD43731.1| 934|Homo sapiens protocadherin gamma C3 ... 30 9.6
>U93572-2|AAC51276.1| 1275|Homo sapiens putative p150 protein.
Length = 1275
Score = 32.3 bits (70), Expect = 2.4
Identities = 23/102 (22%), Positives = 46/102 (45%)
Frame = +3
Query: 3 LGLLPAIGKLYERLLRKRLWDFVSANKILIDEQFGFRARHSCVHQVHRLTEHILLGLNRR 182
+ L+ K+ ++L R+ + K++ +Q GF +H+ + +++ +NR
Sbjct: 533 ISLMNIDAKILNKILANRIQQHIK--KLIHHDQVGFIPGMQGWFNIHK-SINVIQHINRA 589
Query: 183 KPIPTGALFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIR 308
K + D KAFDK+ ++ L +G+ IIR
Sbjct: 590 KDKNHMIISIDAEKAFDKIQQPFMLKTLNKLGIDGTYFKIIR 631
>U93563-1|AAC51261.1| 1275|Homo sapiens putative p150 protein.
Length = 1275
Score = 31.5 bits (68), Expect = 4.1
Identities = 25/118 (21%), Positives = 50/118 (42%)
Frame = +3
Query: 3 LGLLPAIGKLYERLLRKRLWDFVSANKILIDEQFGFRARHSCVHQVHRLTEHILLGLNRR 182
+ L+ K+ ++L R+ + K++ +Q GF + R + +++ +NR
Sbjct: 533 ISLMNIDAKILNKILANRIQQHIK--KLIHHDQVGFIPGMQGWFNI-RKSINVIQHINRA 589
Query: 183 KPIPTGALFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIRDYLSNRSFRYRVEGTR 356
K + D KAFDK+ ++ L +G+ IIR + R+ G +
Sbjct: 590 KDKNHMIISIDAEKAFDKIQQPFMLKTLNKLGIDGTYFKIIRAIYDKPTANIRLNGQK 647
>U93569-2|AAC51271.1| 1275|Homo sapiens putative p150 protein.
Length = 1275
Score = 30.3 bits (65), Expect = 9.6
Identities = 23/102 (22%), Positives = 46/102 (45%)
Frame = +3
Query: 3 LGLLPAIGKLYERLLRKRLWDFVSANKILIDEQFGFRARHSCVHQVHRLTEHILLGLNRR 182
+ L+ K+ ++L R+ + K++ +Q GF + R + +++ +NR
Sbjct: 533 ISLMNIDAKILNKILANRIQQHIK--KLIHHDQVGFIPGMQGWFNI-RKSINVIQHINRA 589
Query: 183 KPIPTGALFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIR 308
K + D KAFDK+ ++ L +G+ + IIR
Sbjct: 590 KDKNHVIISIDAEKAFDKIQQPFMLKTLNKLGIDGMYLKIIR 631
>L11373-1|AAA75391.1| 904|Homo sapiens protocadherin 43 protein.
Length = 904
Score = 30.3 bits (65), Expect = 9.6
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +1
Query: 328 RSDIESRERVPAPSRHSRSPQGSXLSPLLF-SLYI-NDIPRSRRTIWRSSPMTPASTTRV 501
R+ + S R P PS H+ + +G +SP L+ +Y+ D RS + + +P ++ +
Sbjct: 727 RAPVSSLYRTPGPSLHADAVRGGLMSPHLYHQVYLTTDSRRSDPLLKKPGAASPLASRQN 786
Query: 502 GRRXC 516
R C
Sbjct: 787 TLRSC 791
>BC026218-1|AAH26218.1| 934|Homo sapiens protocadherin gamma
subfamily C, 3 protein.
Length = 934
Score = 30.3 bits (65), Expect = 9.6
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +1
Query: 328 RSDIESRERVPAPSRHSRSPQGSXLSPLLF-SLYI-NDIPRSRRTIWRSSPMTPASTTRV 501
R+ + S R P PS H+ + +G +SP L+ +Y+ D RS + + +P ++ +
Sbjct: 728 RAPVSSLYRTPGPSLHADAVRGGLMSPHLYHQVYLTTDSRRSDPLLKKPGAASPLASRQN 787
Query: 502 GRRXC 516
R C
Sbjct: 788 TLRSC 792
>BC019299-1|AAH19299.1| 934|Homo sapiens protocadherin gamma
subfamily C, 3 protein.
Length = 934
Score = 30.3 bits (65), Expect = 9.6
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +1
Query: 328 RSDIESRERVPAPSRHSRSPQGSXLSPLLF-SLYI-NDIPRSRRTIWRSSPMTPASTTRV 501
R+ + S R P PS H+ + +G +SP L+ +Y+ D RS + + +P ++ +
Sbjct: 728 RAPVSSLYRTPGPSLHADAVRGGLMSPHLYHQVYLTTDSRRSDPLLKKPGAASPLASRQN 787
Query: 502 GRRXC 516
R C
Sbjct: 788 TLRSC 792
>AK097143-1|BAC04963.1| 372|Homo sapiens protein ( Homo sapiens
cDNA FLJ39824 fis, clone SPLEN2011981. ).
Length = 372
Score = 30.3 bits (65), Expect = 9.6
Identities = 23/102 (22%), Positives = 46/102 (45%)
Frame = +3
Query: 3 LGLLPAIGKLYERLLRKRLWDFVSANKILIDEQFGFRARHSCVHQVHRLTEHILLGLNRR 182
+ L+ K+ ++L KR+ + K++ +Q GF + + + +++ +NR
Sbjct: 105 ISLMNIDAKILNKILAKRIQQHIK--KLIHHDQVGFIPGMQGWFNIGK-SINVIQHINRA 161
Query: 183 KPIPTGALFFDIAKAFDKVWHNGLIYKLYNMGVPDRLVLIIR 308
K + D KAFDK+ ++ L +G+ IIR
Sbjct: 162 KDKNHMIISIDAEKAFDKIQQPFMLKTLNKLGIDGTYFKIIR 203
>AF152524-1|AAD43784.1| 863|Homo sapiens protocadherin gamma C3
short form protein protein.
Length = 863
Score = 30.3 bits (65), Expect = 9.6
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +1
Query: 328 RSDIESRERVPAPSRHSRSPQGSXLSPLLF-SLYI-NDIPRSRRTIWRSSPMTPASTTRV 501
R+ + S R P PS H+ + +G +SP L+ +Y+ D RS + + +P ++ +
Sbjct: 728 RAPVSSLYRTPGPSLHADAVRGGLMSPHLYHQVYLTTDSRRSDPLLKKPGAASPLASRQN 787
Query: 502 GRRXC 516
R C
Sbjct: 788 TLRSC 792
>AF152337-1|AAD43731.1| 934|Homo sapiens protocadherin gamma C3
protein.
Length = 934
Score = 30.3 bits (65), Expect = 9.6
Identities = 18/65 (27%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Frame = +1
Query: 328 RSDIESRERVPAPSRHSRSPQGSXLSPLLF-SLYI-NDIPRSRRTIWRSSPMTPASTTRV 501
R+ + S R P PS H+ + +G +SP L+ +Y+ D RS + + +P ++ +
Sbjct: 728 RAPVSSLYRTPGPSLHADAVRGGLMSPHLYHQVYLTTDSRRSDPLLKKPGAASPLASRQN 787
Query: 502 GRRXC 516
R C
Sbjct: 788 TLRSC 792
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,984,248
Number of Sequences: 237096
Number of extensions: 2902281
Number of successful extensions: 10316
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10316
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11159604822
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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